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CalCOFI 0903FR
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CalCOFI 0903FR Cruise Prospectus (cruise announcement pdf)
- Current survey data & egg maps
- Loading Days: 14 - 15 Apr 2009, F/V Frosti at San Francisco
- Depart San Francisco on F/V Frosti 16 Apr 2009
- Offloads in San Diego 9 May 2009
- Station Plan: 38 central & northern CalCOFI stations are scheduled plus transects/stations in between standard lines occupied on 0903JD
- Number of Scientific Party: 6 scientists & technicians
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Forms
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All cruise participants going to sea on a NOAA vessel such as the R/V McArthur II must submit the completed Questionnaire and have a recent (within the last 12 months) TB test.
NOAA Health Services Medical Questionnaire (PDF) - New form posted 11/25/08. This revised version of the questionnaire must be used beginning January 1, 2009.
Send the completed form to:
CDR Michelle Pelkey, USPHS
Regional Director of Health Services
NOAA MOC-Pacific
1801 Fairview Avenue East
Seattle, WA 98102
Voice: 206-553-8704
FAX: 206-553-1112
E-mail:
This e-mail address is being protected from spambots. You need JavaScript enabled to view it
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CalCOFI 0903JD left MarFac at 0900 07 March 2009 and after several hours of acoustic calibration in San Diego Bay, started the 75 station pattern. With a freshly cleaned hull, the RV David Starr Jordan made excellent speed, weather-permitting, and completed 71 of the 75 scheduled stations. The last three stations on line 76.7 were cancelled because of 40kt winds and rough seas. One SCCOOS station was also missed; stations not occupied were: 76.7 55; 76.7 51; 76.7 49; & 88.5 30.1.
Preliminary contour plots (click thumbnail for pdf)
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2009 CalCOFI Cruise Schedule |
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2009 CalCOFI Cruise Dates
- CalCOFI 0911NM: 6 - 23 Nov 2009 SIO RV New Horizon; Fall survey: lines 93.3 to 76.7; CalCOFI 0911NM sailed from San Diego on SIO RV New Horizon at 0800 6 Nov 2009. The expedition returned to San Diego at 1500 23 Nov 2009 after successfully occupying all 75 scheduled stations, in spite of frequently rough conditons.
- CalCOFI 0907M2: 14 Jul - 5 Aug 2009 on NOAA RV McArthur II; final announcement; please note that loading will start Sunday 12 Jul since the arrival is scheduled for late Sat evening.
- CalCOFI 0903JD: 7 - 24 Mar 2009, 75 southern stations on NOAA RV David Starr Jordan; Prospectus
- CalCOFI/Sardine Cruise 0903FR: 16 Apr - 09 May 2009. Trawling, CUFES, & CTDs from San Francisco to San Diego on FV Frosti; occupying northern lines 60.0-73.3 and transects between southern lines 76.7-93.3;
- CalCOFI 0901NM: 7 - 25 Jan 2009 on SIO RV New Horizon ( Prospectus). Loading and setup days: Jan 2, 5, 6 (Dec preload, with approval). Contacts at SIO: Dave Wolgast or James Wilkinson or at SWFSC: Dave Griffith or Amy Hays for additional info or requests. All participants should submit the following forms to David Wolgast:
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Scientific operations on CalCOFI cruises are performed around the clock 7 days a week. Scientists, technicians, and volunteers usually work 12hr shifts scheduled from noon to midnight or midnight to noon. Although transit times between stations can vary and are heavily influenced by sea state, transits between stations 20NM (nautical miles; eg. 93.50 to 93.55) apart take 2hrs; transits between stations 40NM apart (eg. 93.60 to 93.70) take 4hrs. The time to complete work on a station varies as well but a typical station takes ~2.5hrs. Longer stations are: primary productivity stations (~3hrs, daily at noon); basin stations (~3hrs, 2 per cruise); 3500m deep CTD casts (~5hrs, 2 per cruise); Oozeki trawl stations (~3.5hrs, ~12 per cruise); DIC stations (~3hrs, 9 per cruise).
Each standard CalCOFI station usually includes the following:
Additional pictures can be viewed at the CalCOFI Media Gallery.
- A Seabird 9/11plus CTD/Rosette consisting of 24 10-liter hydrographic bottles is lowered to 500 meters (depth permitting) measuring physical parameters (temperature, salinity, oxygen, fluorescence, transmittance, NO3 and PAR); bottles are closed at discrete depths isolating seawater for analysis of: oxygen concentration, salinity, nutrients, chlorophyll and phytoplankton.
- A CalBOBL (CalCOFI Bongo) standard oblique plankton tow with 300 meters of wire out, depth permitting, using paired 505 um mesh nets with 71 cm diameter openings. The technical requirements for this tow are: Descent rate of 50 meters per minute. All tows with ascending wire angles lower than 38 degrees or higher than 51 degrees in the final 100 meters of wire will be repeated. Additionally, a 45 degrees wire angle should be closely maintained during the ascent and descent of the net frame. The Bongo frame is fitted with a self-contained OPC (Optical Particle Counter) mounted inside the port side opening.
- A Manta net (neuston) tow, using a 505 um mesh net on a frame with a mouth area of 0.1333 m^2. The Manta net is towed at surface, sampling 8cm below the air-sea interface, for 15mins at ~1.5kts.
- A Pairovet (vertical) plankton tow is performed at all stations inshore of, and including station 70. The Pairovet net fishes from 70 meters to the surface (depth permitting) using paired 25 cm diameter 150 um mesh nets. The technical requirements for Pairovet tows are: Descent rate of 70 meters per minute, ascent rate of 70 meters per minute. All tows with wire angles exceeding 15 degrees during the ascent will be repeated.
- A PRPOOS (Planktonic Rate Processes in Oligotrophic Ocean Systems) vertical net tow is performed at all stations on line 90.0 and 80.0 as well as stations out to and including station 70.0 on lines 86.7 and 83.3. These stations are occupied as part of the LTER(Long Term Ecological Reserve) project. The mesh of the PRPOOS net is 202 um and the tow is a vertical cast up from 210 meters.
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CalCOFI 0903JD
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NOAA Ship: NOAA Ship David Starr Jordan
Cruise Number: DS-09-01
Cruise Dates: March 7 - 24, 2009
Cruise Title: CalCOFI Survey.
Study Area: US/Mexican border to Avila Beach, CA out to 400 nautical miles.
(PDF version of this document)
Itinerary:
- Ship loading and gear preparation: 02 - 05 MAR.
- Leg 1: 07 MAR - Station 93.3/26.7; 24 MAR - Arrive San Francisco, CA
- The ship will offload scientific gear in San Francisco, CA.
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CalCOFI Cruise 0903JD Marine Mammal Survey Summary
Lisa Munger, Greg Campbell, Andrea Havron, Dominique Camacho, and John Hildebrand (PI)
Visual
Two trained marine mammal observers were posted on the flying bridge of the David Starr Jordan (JD) to scan for cetaceans using handheld binoculars (7 power and 18 power), stand-mounted “big-eyes” (25 power binoculars), and naked eye. Visual observations were conducted during daylight hours while the ship was underway steaming at approximately 10 kn between stations. Opportunistic sighting data were also recorded while the ship was on station or occasionally during inclement weather/sea state (Beaufort 6 and above).
Sighting conditions were generally good to excellent nearshore but fair to poor offshore, with marginal conditions (Beaufort 5+) on over half the cruise, and sea state or weather leading to discontinuation of survey effort on five of the cruise days. Survey effort was curtailed in Beaufort 6+ between 83.100 and 83.90 on 3/17/09, and again the following day (3/18/09) between 83.70 and 83.60. Fog prohibited surveys the morning and evening of 3/19/09 during the transit from line 83 to line 80. Survey effort ceased on 3/21/09 at station 77.90 and did not resume, as Beaufort 7+ conditions prevailed for the remainder of the cruise.
Sightings are summarized in Table 1 and displayed in Figure 1. Species diversity was low compared to other cruises/seasons, with Dall’s porpoise (Phocoena dalli) sightings outnumbering sightings of any other species by about four to one (Table 1). The highest diversity was observed inshore along the southern lines (87 to 93), and included fin and grey whales as well as odontocetes (Figure 1). The majority of offshore sightings were Dall’s porpoise, occurring on every line except the southernmost (line 93); a few dolphin sightings (common, Pacific white-sided, and unidentified), and one unidentified large whale were also observed offshore.
Acoustic
During daylight transits, a six-element hydrophone array was towed at 200 m for recording odontocete clicks and whistles from 3 to 250 kHz. At 1-2 nmi from each daylight station, an omnidirectional Navy sonobuoy was deployed to record baleen whale and low-frequency odontocete sounds, e.g. whistles, within 5 Hz to 22 kHz bandwidth.
Delphinid clicks and whistles were detected on the towed array on lines 93, 90, and the inshore portion of line 87 (Figure 2). Species sighted during acoustic detections included common and bottlenose dolphins (Delphinus sp. and Tursiops truncatus). Array recordings are pending review for Dall’s porpoise clicks, which are at frequencies above the real-time monitoring capabilities of the software currently in use.
During sonobuoy deployments, humpback whales were detected at several offshore stations on lines 80 through 93 (Figure 3). Fin whale calls were detected on one sonobuoy near the coast on line 87, corresponding to fin whale sighting locations (see Figure 1). Dolphin whistles were detected on three inshore sonobuoys (coastal and southern Channel Islands), and on two offshore sonobuoys on line 93. Sperm whale clicks were detected on one sonobuoy near the shelf break on line 77.
Table 1. Summary of cetacean sightings, CC0903JD.
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Species Code
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Species Name
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Total # Sightings
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Total # individuals
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Ba
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Minke whale (Balaenoptera acutorostrata)
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1
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1
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Bp
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Fin whale (Balaenoptera physalus)
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5
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7
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Dc
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Long-beaked common dolphin (Delphinus capensis)
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4
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861
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Dd
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Short-beaked common dolphin (Delphinus delphis)
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4
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181
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Dsp.
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Common dolphin (Delphinus sp.)
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4
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241
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Er
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Grey whale (Eschrichtius robustus)
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3
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4
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Lo
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Pacific white-sided dolphin (Lagenorhynchus obliquidens)
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2
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4
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Pd
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Dall’s porpoise (Phocoena dalli)
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16
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71
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Tt
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Bottlenose dolphin (Tursiops truncatus)
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1
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2
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UD
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Unidentified dolphin
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4
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29
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ULW
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Unidentified large whale
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5
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5
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All species
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50
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1411
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Figure 1. Cetacean sightings, CC0903JD.

Figure 2. Towed array deployments (yellow line segments) and acoustic detections from 3 to 96 kHz, CC0903JD.

Figure 3. Sonobuoy deployments and acoustic detections below 22 kHz, CC0903JD. Mn=humpback whale ( Megaptera novaeangliae), Pm=sperm whale ( Physeter macrocephalus) |
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Ship Info
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NOAA RV David Starr Jordan
The 171-foot oceanographic research vessel DAVID STARR JORDAN is capable of operating a variety of biological and oceanographic sampling gear. DAVID STARR JORDAN's primary mission is to provide a working platform for the study of the ocean's living resources. In addition to the previous capabilities, the ship is also equipped with a bow chamber and can be outfitted with a helicopter flight deck. |
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The Community
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CUFES: Continuous Underway Fish Egg Sampler (http://cufes.ucsd.edu/)
The Continuous Underway Fish Egg Sampler (CUFES) is an instrument used to collect pelagic eggs of fish and related hydrographic data from ~3m depth on a moving ship. These samples and data, typically collected during winter and spring cruises, are used to investigate spawning habitat and estimate spawning biomass. When large aggregations of fish eggs are present, Pair-o-vet vertical net tows are done to calibrate egg density.
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