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NCOG RNA-DNA Sampling - NCOG Project

DNA & RNA samples are collected daily on the noontime primary productivity station, typically at 4 depths - 10m, chl max, 170m, & 515m. Additional NCOG DNA & RNA samples are collected on CCE-LTER cardinal stations (refer to NCOG Sampling Method for station list). The samples collected for DNA and RNA analyses are for studies examining the diversity, biogeography, and activity of planktonic microbes. DNA samples are collected in conjunction with CCE-LTER particulate organic carbon and nitrogen (POC/PON) samples on NCOG stations and will be used to assay the diversity and distribution of microbes and other planktonic organisms. POC and PON measurements provide information on the spatial and temporal variability, and relative carbon:nitrogen (C:N) ratio, of the standing crop of biomass in the CCE. By linking analyses of microbial community and structure and diversity directly to measurements of ecosystem productivity we can evaluate microbial population and community dynamics in context with other indictors of ecosystem productivity. NCOG Sampling Method is outlined here.


RNA samples, collected in conjunction with Primary Productivity stations and CCE-LTER Cardinal stations (Figure 1; line 80 and line 90 stations selected to represent different floral regimes) (http://www.calcofi.org/field-work/station-work.html) will be used to examine patterns of gene expression in virioplankton, bacterioplankton and phytoplankton (Figure 2). In order to evaluate linkages between processes occurring in the surface layer and deeper in the water column, each cardinal station is also sampled in the mesopelagic at 515m and, when possible, two stations (one in the northern and one in the southern region of the sampling grid) will be sampled from the bathypelagic zone at 3500m.

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