2019-11-19 14:19:30,087 DEBUG run_quick about to write control file parameters to --yearbase 2019 --cruisename oc1911a --configtype python --sonar wh300 --dbname a_oc --datatype uhdas --cfgpath /home/data/oc1911a/proc/wh300/config --ens_len 120 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea #offset between transducer and gps, applied in at-sea processing # NOTE : read special instructions to change offsets # diagnostics in cal/watertrk/guess_xducerxy.out # parameters used: --xducer_dx 1 --xducer_dy -30 ## see config/oc1911a_proc.py for other settings --skip_avg ## see above --max_search_depth 500 --ping_headcorr --proc_engine python --refuv_smoothwin 3 --incremental --top_plotbin 1 --auto 2019-11-19 14:19:30,088 DEBUG quick_adcp sys.argv = /usr/local/currents/bin/run_quick.py -d wh300 2019-11-19 14:19:30,089 DEBUG quick_setup found cruise_info.hcorr (abxtwo_udp, adu, 3) 2019-11-19 14:19:30,090 DEBUG quick_setup no heading correction will be used within the ensembles but values are staged in cal/rotate/hcorr.asc 2019-11-19 14:19:30,090 INFO quick_setup fix file is a_oc.gps 2019-11-19 14:19:30,090 INFO quick_setup reflayer: ref_method = refsm 2019-11-19 14:19:30,090 INFO quick_setup reflayer: refuv_source = nav 2019-11-19 14:19:30,090 INFO quick_setup reflayer: refuv_smoothwin = 3 2019-11-19 14:19:30,090 INFO quick_adcp ===================================================== 2019-11-19 14:19:30,090 INFO quick_adcp ===================================================== 2019-11-19 14:19:30,090 INFO quick_adcp command line was: /usr/local/currents/bin/run_quick.py -d wh300 2019-11-19 14:19:30,090 INFO quick_adcp cwd is /home/data/oc1911a/proc/wh300 about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2019-11-19 14:19:30,090 DEBUG quick_asect extracting matlab files for wh300 2019-11-19 14:19:30,113 DEBUG quick_setup data directory: /home/data/oc1911a/raw/wh300 2019-11-19 14:19:30,115 INFO quick_setup found 180 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/oc1911a/raw/wh300/*.raw" 2019-11-19 14:19:30,115 INFO quick_setup presently in scan, writing filelist to /home/data/oc1911a/proc/wh300/ping/datafile_list.txt 2019-11-19 14:19:30,116 INFO quick_setup found 180 raw data files 2019-11-19 14:19:30,116 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/oc1911a/raw/wh300/oc2019_307_64520.raw ... 2019-11-19 14:19:30,116 DEBUG quick_adcp Tue Nov 19 14:19:30 2019 running: /usr/local/currents/bin/run_quick.py -d wh300 ----- adcpsect variables ------ cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [40, 60, 80, 100, 120] firstdepth 9 gridnum 80 increment 2 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2019 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 20 bl_half_width 3 btrk_step 1.5 cfgpath /home/data/oc1911a/proc/wh300/config cntfile /home/data/oc1911a/proc/wh300/wh300_qpy.cnt commands None configtype python cruisename oc1911a data_def vmadcp.def data_filelist /home/data/oc1911a/proc/wh300/ping/datafile_list.txt datadir /home/data/oc1911a/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False ens_len 120 expert None filelist ['/home/data/oc1911a/raw/wh300/oc2019_307_64520.raw', '/home/data/oc1911a/raw/wh300/oc2019_307_64800.raw', '/home/data/oc1911a/raw/wh300/oc2019_307_72000.raw', '/home/data/oc1911a/raw/wh300/oc2019_307_79200.raw', '/home/data/oc1911a/raw/wh300/oc2019_308_00000.raw', '/home/data/oc1911a/raw/wh300/oc2019_308_07200.raw', '/home/data/oc1911a/raw/wh300/oc2019_308_14400.raw', 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'/home/data/oc1911a/raw/wh300/oc2019_321_64800.raw', '/home/data/oc1911a/raw/wh300/oc2019_321_72000.raw', '/home/data/oc1911a/raw/wh300/oc2019_321_79200.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_00000.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_07200.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_14400.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_21600.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_28800.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_36000.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_43200.raw', '/home/data/oc1911a/raw/wh300/oc2019_322_50400.raw'] filter_hwidth 0.0208 find_pflags False firstdepth 9 fixfile a_oc.gps fixfilexy a_oc.agt frequency 300 hcorr_inst abxtwo_udp help False incremental True instname wh300 jitter 15 max_BLKprofiles 300 max_search_depth 500 maxrunsecs None min_filter_fraction 0.5 mixed_pings False model wh nosave_editcfg 0 numbins 128 pgmin 50 ping_headcorr True pingpref None pingtype bb printformats png proc_engine python proc_yearbase 2019 procdir /home/data/oc1911a/proc/wh300 py_gbindirbase /home/data/oc1911a/gbin ref_method refsm refuv_inputfile a_oc.agt refuv_smoothwin 3 refuv_source nav rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 save_lastens 0 skip_avg True sonar wh300 steps2rerun sum_xducer_dx 1 sum_xducer_dy -30 time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 top_plotbin 1 tuv_file refsm_tuv.asc txy_file a_oc.agt ub_type 1920 uhdas_config yearbase = 2019 uhdas_dir = /home/data/oc1911a sonar = wh300 gbin = /home/data/oc1911a/gbin gbinsonar = /home/data/oc1911a/gbin/wh300 raw = /home/data/oc1911a/raw rawsonar = /home/data/oc1911a/raw/wh300 rbin = /home/data/oc1911a/rbin proc = /home/data/oc1911a/proc procsonar = /home/data/oc1911a/proc/wh300 other attributes: gbin_params = hdg_inst : gyro hdg_inst_msgs : [('gyro', 'hdg'), ('abxtwo_udp', 'adu'), ('adu5', 'adu')] hdg_msg : hdg pitch_inst : abxtwo_udp pitch_msg : adu pos_inst : gpsnav pos_msg : gps roll_inst : abxtwo_udp roll_msg : adu hcorr = ['abxtwo_udp', 'adu', 3.0] acc_heading_cutoff = 0.02 update_gbin False use_rbins False uvwref_end None uvwref_start None vardoc False varvals False wtrk_step 7 xducer_dx 1 xducer_dy -30 yearbase 2019 configured to run the following steps: write_clearflags scandata avg_and_load codaseditsetup setflags getnav lst_hdg plot_headcorr navsteps lst_temp plot_temp lst_npings calib matfiles adcpsect refabs smoothnav putnav refplots codaseditsetup 2019-11-19 14:19:30,116 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,116 INFO quick_adcp step 1: set up files in "edit" directory 2019-11-19 14:19:30,116 INFO quick_run file exists (edit/clearflags.tmp). not writing 2019-11-19 14:19:30,117 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,117 INFO quick_adcp step 2: scan files for time range 2019-11-19 14:19:30,117 DEBUG quick_npy Starting: scanping 2019-11-19 14:19:30,223 DEBUG quick_npy Ending: scanping 2019-11-19 14:19:30,225 DEBUG quick_subs start_end_time 2019/11/04 17:55:20 to 2019/11/04 17:57:27 2019-11-19 14:19:30,225 DEBUG quick_subs dd0: 307.746759 dd1: 307.748229 2019-11-19 14:19:30,226 DEBUG quick_subs running external command "lstblock adcpdb/a_oc adcpdb/a_oc.lst" 2019-11-19 14:19:30,230 DEBUG quick_subs lstblock ran successfully. 2019-11-19 14:19:30,231 DEBUG quick_subs start_end_time 2019/11/04 17:57:20 to 2019/11/19 14:17:21 2019-11-19 14:19:30,231 DEBUG quick_subs dd0: 307.748148 dd1: 322.595382 2019-11-19 14:19:30,231 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2019-11-19 14:19:30,231 DEBUG quick_adcp origdb_time_range is 2019/11/04 17:57:20 to 2019/11/19 14:17:21 2019-11-19 14:19:30,231 DEBUG quick_adcp (307.748148 to 322.595382) 2019-11-19 14:19:30,231 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,231 INFO quick_adcp step 3: generate averaged data... 2019-11-19 14:19:30,231 INFO quick_run file load/ping_editparams.txt exists. not replacing 2019-11-19 14:19:30,231 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,231 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/load 2019-11-19 14:19:30,231 DEBUG quick_setup running python command "run_pingavg_npy" 2019-11-19 14:19:30,231 DEBUG quick_npy Starting: pingavg 2019-11-19 14:19:30,233 DEBUG quick_npy xducerxy is [1, -30] 2019-11-19 14:19:30,233 DEBUG quick_npy uvwref is None 2019-11-19 14:19:30,233 DEBUG quick_npy singleping editing parameters: 2019-11-19 14:19:30,233 DEBUG quick_npy ecutoff : 0.500000 2019-11-19 14:19:30,233 DEBUG quick_npy cor_cutoff : 70 2019-11-19 14:19:30,233 DEBUG quick_npy weakprof_percent : 50 2019-11-19 14:19:30,233 DEBUG quick_npy rl_startbin : 2 2019-11-19 14:19:30,233 DEBUG quick_npy rl_endbin : 20 2019-11-19 14:19:30,233 DEBUG quick_npy refavg_valcutoff : 1 2019-11-19 14:19:30,233 DEBUG quick_npy ampfilt : 40 2019-11-19 14:19:30,233 DEBUG quick_npy max_search_depth : 500 2019-11-19 14:19:30,233 DEBUG quick_npy bigtarget_ampthresh : 55 2019-11-19 14:19:30,233 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2019-11-19 14:19:30,233 DEBUG quick_npy bigtarget_mab_window : 11 2019-11-19 14:19:30,240 INFO pingavg ---------------- 2019-11-19 14:19:30,240 INFO pingavg sonar is wh300 2019-11-19 14:19:30,240 INFO pingavg Pingavg.run for time range 322.583331 to 322.596840 2019-11-19 14:19:30,240 INFO pingavg transducer offset: xducer_dx = 1.000, xducer_dy = -30.000 2019-11-19 14:19:30,240 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2019-11-19 14:19:30,240 INFO pingavg ---------------- 2019-11-19 14:19:30,243 DEBUG pingavg Chunk 1 of 1, 322.583331 to 322.596840 2019-11-19 14:19:30,243 DEBUG pingavg Nothing written 2019-11-19 14:19:30,243 DEBUG quick_npy wrote 0 averages 2019-11-19 14:19:30,243 DEBUG quick_npy Ending: pingavg 2019-11-19 14:19:30,243 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,243 INFO quick_adcp step 4: load averaged data (to database) 2019-11-19 14:19:30,244 DEBUG quick_subs in del_overlapping: lastblock: 36 lastcmd: 36 delblks: [36] loadblks: [36] 2019-11-19 14:19:30,244 DEBUG quick_subs blockfiles remain; running mkblkdir 2019-11-19 14:19:30,244 DEBUG quick_subs running mkblkdir adcpdb/mkblkdir.tmp 2019-11-19 14:19:30,248 DEBUG quick_run [36] 2019-11-19 14:19:30,248 DEBUG quick_run cmdlist 2019-11-19 14:19:30,248 DEBUG quick_run ['./ens_blk036.cmd'] 2019-11-19 14:19:30,250 INFO quick_run loaded time range: 2019/11/19 07:57:21 to 2019/11/19 14:19:21 2019-11-19 14:19:30,250 DEBUG quick_setup load/ldcodas.tmp exists 2019-11-19 14:19:30,250 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,250 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/load 2019-11-19 14:19:30,251 DEBUG quick_setup running python command "ldcodas" 2019-11-19 14:19:30,251 DEBUG quick_subs filling "thisload" timerange 2019-11-19 14:19:30,252 DEBUG quick_subs in ldcodas 2019-11-19 14:19:30,252 DEBUG quick_subs cmdlist: 2019-11-19 14:19:30,252 DEBUG quick_subs ['./ens_blk036.cmd'] 2019-11-19 14:19:30,252 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2019 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk036.cmd 2019-11-19 14:19:30,252 DEBUG quick_setup about to run ldcodas ldcodas.tmp 2019-11-19 14:19:30,267 INFO quick_run 37 block files present 2019-11-19 14:19:30,268 DEBUG quick_subs running external command "lstblock adcpdb/a_oc adcpdb/a_oc.lst" 2019-11-19 14:19:30,271 DEBUG quick_subs lstblock ran successfully. 2019-11-19 14:19:30,271 DEBUG quick_subs start_end_time 2019/11/04 17:57:20 to 2019/11/19 14:19:21 2019-11-19 14:19:30,271 DEBUG quick_subs dd0: 307.748148 dd1: 322.596771 2019-11-19 14:19:30,272 INFO quick_adcp database time range: 2019-11-19 14:19:30,272 INFO quick_adcp 2019/11/04 17:57:20 to 2019/11/19 14:19:21 2019-11-19 14:19:30,272 INFO quick_adcp (307.748148 to 322.596771) 2019-11-19 14:19:30,272 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,272 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/adcpdb 2019-11-19 14:19:30,272 DEBUG quick_setup running python command "lst_conf" 2019-11-19 14:19:30,272 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2019-11-19 14:19:30,272 DEBUG quick_setup about to run lst_conf lst_conf.tmp 2019-11-19 14:19:30,299 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,299 INFO quick_adcp step 5: set up files for codas editing (gautoedit.py) 2019-11-19 14:19:30,299 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2019-11-19 14:19:30,299 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,299 INFO quick_adcp step 6: run setflags? 2019-11-19 14:19:30,299 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,299 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/edit 2019-11-19 14:19:30,299 DEBUG quick_setup running python command "write_setflags" 2019-11-19 14:19:30,299 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2019-11-19 14:19:30,299 DEBUG quick_setup about to run setflags setflags.tmp 2019-11-19 14:19:30,361 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,361 INFO quick_adcp step 7: get navigation 2019-11-19 14:19:30,361 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,361 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:30,361 DEBUG quick_setup running python command "catnav" 2019-11-19 14:19:30,364 INFO quick_subs navigation file nav/a_oc.gps created from load/*.gps2 2019-11-19 14:19:30,367 INFO quick_subs navigation file nav/a_oc.agt created from load/*.gpst2 2019-11-19 14:19:30,372 DEBUG quick_mpl Starting plot: uvship 2019-11-19 14:19:30,786 DEBUG quick_mpl Ending plot: uvship 2019-11-19 14:19:30,786 INFO quick_run plotted uvship 2019-11-19 14:19:30,786 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,786 INFO quick_adcp step 8: list heading 2019-11-19 14:19:30,786 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2019-11-19 14:19:30,786 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:30,786 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/cal/rotate 2019-11-19 14:19:30,786 DEBUG quick_setup running python command "lst_hdg" 2019-11-19 14:19:30,786 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2019 time_ranges: all 2019-11-19 14:19:30,787 DEBUG quick_setup about to run lst_hdg lst_hdg.tmp 2019-11-19 14:19:30,824 INFO quick_run ... headings extracted 2019-11-19 14:19:30,824 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:30,824 INFO quick_adcp step 9: plot heading correction 2019-11-19 14:19:30,824 DEBUG quick_run hcorr_inst is abxtwo_udp 2019-11-19 14:19:30,825 DEBUG quick_mpl Starting plot: hcorr 2019-11-19 14:19:30,921 DEBUG quick_mpl found 14.848615 days of data 2019-11-19 14:19:30,922 DEBUG quick_mpl figures with 4 panels per page, 1.000000 days per panel 2019-11-19 14:19:30,922 DEBUG quick_mpl printing 4 pages 2019-11-19 14:19:31,268 DEBUG quick_mpl Ending plot: hcorr 2019-11-19 14:19:31,268 INFO quick_run plots are in cal/rotate/*png 2019-11-19 14:19:31,268 INFO quick_adcp ------------------------- 2019-11-19 14:19:31,268 INFO quick_adcp ---- running navsteps --- 2019-11-19 14:19:31,268 INFO quick_adcp ------------------------- 2019-11-19 14:19:31,268 INFO quick_adcp step 10: nav steps: run adcpsect 2019-11-19 14:19:31,268 INFO quick_adcp navstep 1 2019-11-19 14:19:31,268 DEBUG quick_setup nav/as_nav.tmp exists 2019-11-19 14:19:31,268 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:31,269 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:31,269 DEBUG quick_setup running python command "as_nav" 2019-11-19 14:19:31,269 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2019 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2019/11/04 17:57:20 to 2019/11/19 14:19:21 /* the whole time range */ 2019-11-19 14:19:31,269 DEBUG quick_setup about to run adcpsect as_nav.tmp 2019-11-19 14:19:31,343 INFO quick_run ... ran adcpsect for navsteps 2019-11-19 14:19:31,343 INFO quick_adcp ------------------------- 2019-11-19 14:19:31,343 INFO quick_adcp step 11: nav steps: run refabs 2019-11-19 14:19:31,343 INFO quick_adcp navstep 2 2019-11-19 14:19:31,343 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:31,343 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:31,343 DEBUG quick_setup running python command "refabs" 2019-11-19 14:19:31,343 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.agt output: a_oc.ref year_base= 2019 ensemble_length= 120 gap_tolerance= 10 2019-11-19 14:19:31,343 DEBUG quick_setup about to run refabs refabs.tmp 2019-11-19 14:19:31,389 INFO quick_run ... ran refabs for navsteps 2019-11-19 14:19:31,389 INFO quick_adcp ------------------------- 2019-11-19 14:19:31,389 INFO quick_adcp step 12: nav steps: run smoothr for plots 2019-11-19 14:19:31,389 INFO quick_adcp navstep 3 2019-11-19 14:19:31,389 DEBUG quick_setup nav/smoothr.tmp exists 2019-11-19 14:19:31,389 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:31,389 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:31,389 DEBUG quick_setup running python command "smoothr" 2019-11-19 14:19:31,389 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2019-11-19 14:19:31,389 DEBUG quick_setup about to run smoothr smoothr.tmp 2019-11-19 14:19:31,659 INFO quick_run ... ran smoothr 2019-11-19 14:19:31,659 INFO quick_adcp ------------------------- 2019-11-19 14:19:31,659 INFO quick_adcp step 13: nav steps: smooth navigation for velocities 2019-11-19 14:19:31,659 INFO quick_adcp navstep 4 2019-11-19 14:19:31,659 INFO quick_run smoothing method for ship speed: refsm 2019-11-19 14:19:31,659 INFO quick_run smoothing window: 3 2019-11-19 14:19:31,659 INFO quick_run ship speed source: nav 2019-11-19 14:19:31,659 DEBUG quick_npy Starting: refsm 2019-11-19 14:19:32,076 DEBUG quick_npy Ending: refsm 2019-11-19 14:19:32,076 INFO quick_run ... shipspeed smoothing step done 2019-11-19 14:19:32,076 INFO quick_adcp ------------------------- 2019-11-19 14:19:32,076 INFO quick_adcp step 14: nav steps: put positions and uvship from refsm into codasdb 2019-11-19 14:19:32,076 INFO quick_adcp navstep 5 2019-11-19 14:19:32,076 DEBUG quick_setup nav/put_txy.tmp exists 2019-11-19 14:19:32,076 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:32,076 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:32,076 DEBUG quick_setup running python command "put_txy" 2019-11-19 14:19:32,076 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc.agt year_base= 2019 tolerance= 5 2019-11-19 14:19:32,076 DEBUG quick_setup about to run put_txy put_txy.tmp 2019-11-19 14:19:32,127 INFO quick_run ... ran put_txy 2019-11-19 14:19:32,127 DEBUG quick_setup nav/put_tuv.tmp exists 2019-11-19 14:19:32,128 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:32,128 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:32,128 DEBUG quick_setup running python command "put_tuv" 2019-11-19 14:19:32,128 DEBUG quick_subs dbname: ../adcpdb/a_oc shipspeed_file: refsm_tuv.asc year_base= 2019 tolerance= 5 2019-11-19 14:19:32,128 DEBUG quick_setup about to run put_tuv put_tuv.tmp 2019-11-19 14:19:32,180 INFO quick_run ... ran put_tuv 2019-11-19 14:19:32,180 DEBUG quick_mpl Starting plot: nav 2019-11-19 14:19:32,419 DEBUG quick_mpl Ending plot: nav 2019-11-19 14:19:32,419 INFO quick_run ... made navigation plot 2019-11-19 14:19:32,419 INFO quick_adcp ------------------------- 2019-11-19 14:19:32,419 INFO quick_adcp step 15: nav steps: make reflayer plots 2019-11-19 14:19:32,419 INFO quick_adcp navstep 6 2019-11-19 14:19:32,420 DEBUG quick_mpl Starting plot: refl 2019-11-19 14:19:32,656 DEBUG quick_mpl found 14.847226 days of data 2019-11-19 14:19:32,656 DEBUG quick_mpl start day is 307.000000 2019-11-19 14:19:32,656 DEBUG quick_mpl figures with 2.000000 days per page 2019-11-19 14:19:32,656 DEBUG quick_mpl printing 8 pages 2019-11-19 14:19:32,656 DEBUG quick_mpl yrange will be [1.000000, 1.000000] 2019-11-19 14:19:33,015 DEBUG quick_mpl Ending plot: refl 2019-11-19 14:19:33,015 INFO quick_run ... made reflayer plots 2019-11-19 14:19:33,015 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:33,015 INFO quick_adcp step 10: run calibration steps 2019-11-19 14:19:33,015 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2019-11-19 14:19:33,015 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,015 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/cal/botmtrk 2019-11-19 14:19:33,015 DEBUG quick_setup running python command "lst_btrk" 2019-11-19 14:19:33,015 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2019 time_ranges: 2019/11/04 17:57:20 to 2019/11/19 14:19:21 /* whole time range */ 2019-11-19 14:19:33,015 DEBUG quick_setup about to run lst_btrk lst_btrk.tmp 2019-11-19 14:19:33,037 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2019-11-19 14:19:33,037 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,037 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/cal/botmtrk 2019-11-19 14:19:33,038 DEBUG quick_setup running python command "refabsbt" 2019-11-19 14:19:33,038 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.agt output: a_oc.ref year_base= 2019 ensemble_length= 120 gap_tolerance= 60 2019-11-19 14:19:33,038 DEBUG quick_setup about to run refabsbt refabsbt.tmp 2019-11-19 14:19:33,041 INFO quick_run ...bottom track info in check cal/botmtrk 2019-11-19 14:19:33,042 DEBUG quick_mpl Starting plot: btcal 2019-11-19 14:19:33,043 DEBUG quick_mpl No data in a_oc.btm 2019-11-19 14:19:33,043 DEBUG quick_mpl Returning from Btplot with no output 2019-11-19 14:19:33,043 DEBUG quick_mpl Ending plot: btcal 2019-11-19 14:19:33,043 DEBUG quick_setup nav/as_nav.tmp exists 2019-11-19 14:19:33,043 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,043 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/nav 2019-11-19 14:19:33,043 DEBUG quick_setup running python command "as_nav" 2019-11-19 14:19:33,043 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2019 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2019/11/04 17:57:20 to 2019/11/19 14:19:21 /* the whole time range */ 2019-11-19 14:19:33,043 DEBUG quick_setup about to run adcpsect as_nav.tmp 2019-11-19 14:19:33,123 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2019-11-19 14:19:33,123 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,124 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/cal/watertrk 2019-11-19 14:19:33,124 DEBUG quick_setup running python command "timslip" 2019-11-19 14:19:33,124 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.agt reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2019 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2019-11-19 14:19:33,124 DEBUG quick_setup about to run timslip timslip.tmp 2019-11-19 14:19:33,146 INFO quick_run ... watertrack info in cal/watertrk 2019-11-19 14:19:33,146 DEBUG quick_mpl Starting plot: wtcal 2019-11-19 14:19:33,149 DEBUG quick_mpl Found 163 calibration points 2019-11-19 14:19:33,584 DEBUG quick_mpl Ending plot: wtcal 2019-11-19 14:19:33,584 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,584 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/cal/watertrk 2019-11-19 14:19:33,584 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2019-11-19 14:19:33,584 DEBUG quick_npy Starting: guess_xducerxy 2019-11-19 14:19:33,843 DEBUG quick_npy Ending: guess_xducerxy 2019-11-19 14:19:33,844 INFO quick_run ... check cal/watertrk for estimate 2019-11-19 14:19:33,844 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:33,844 INFO quick_adcp step 11: extract and plot temperature 2019-11-19 14:19:33,844 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:33,844 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/edit 2019-11-19 14:19:33,844 DEBUG quick_setup running python command "lst_temp" 2019-11-19 14:19:33,844 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2019 time_ranges: all 2019-11-19 14:19:33,844 DEBUG quick_setup about to run lst_temp lst_temp.tmp 2019-11-19 14:19:33,892 DEBUG quick_mpl Starting plot: temp 2019-11-19 14:19:33,974 DEBUG quick_mpl plotting 10692 points 2019-11-19 14:19:34,097 DEBUG quick_mpl Ending plot: temp 2019-11-19 14:19:34,098 INFO quick_run plotted temperature 2019-11-19 14:19:34,098 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:34,098 INFO quick_adcp step 12: extract and plot number of pings per ensemble 2019-11-19 14:19:34,098 DEBUG quick_setup edit/lst_npings.tmp exists 2019-11-19 14:19:34,098 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,098 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/edit 2019-11-19 14:19:34,098 DEBUG quick_setup running python command "lst_npings" 2019-11-19 14:19:34,098 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc_npings.txt step_size= 1 year_base= 2019 time_ranges: all 2019-11-19 14:19:34,098 DEBUG quick_setup about to run lst_npings lst_npings.tmp 2019-11-19 14:19:34,140 DEBUG quick_mpl Starting plot: npings 2019-11-19 14:19:34,208 DEBUG quick_mpl plotting 10692 points 2019-11-19 14:19:34,299 DEBUG quick_mpl Ending plot: npings 2019-11-19 14:19:34,300 INFO quick_run ... plotted number of pings per ensemble 2019-11-19 14:19:34,300 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:34,300 INFO quick_adcp step 13: extract matlab "allbins" 2019-11-19 14:19:34,300 DEBUG quick_asect step 18: make matlab files for plotting 2019-11-19 14:19:34,300 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,300 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/vector 2019-11-19 14:19:34,300 DEBUG quick_setup running python command "timegrid" 2019-11-19 14:19:34,300 DEBUG quick_setup about to run timegrid a_oc.tmp 2019-11-19 14:19:34,305 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,305 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/vector 2019-11-19 14:19:34,305 DEBUG quick_setup running python command "as_vect" 2019-11-19 14:19:34,305 DEBUG quick_setup about to run adcpsect as_vect.tmp 2019-11-19 14:19:34,390 DEBUG quick_asect done making vector matfiles 2019-11-19 14:19:34,390 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,390 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/contour 2019-11-19 14:19:34,390 DEBUG quick_setup running python command "timegrid" 2019-11-19 14:19:34,390 DEBUG quick_setup about to run timegrid a_oc.tmp 2019-11-19 14:19:34,396 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,396 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/contour 2019-11-19 14:19:34,396 DEBUG quick_setup running python command "as_cont" 2019-11-19 14:19:34,396 DEBUG quick_setup about to run adcpsect as_cont.tmp 2019-11-19 14:19:34,555 DEBUG quick_setup starting in /home/data/oc1911a/proc/wh300 2019-11-19 14:19:34,555 DEBUG quick_setup executing commands from /home/data/oc1911a/proc/wh300/contour 2019-11-19 14:19:34,555 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2019-11-19 14:19:35,046 DEBUG quick_asect done running getmat with "allbins" 2019-11-19 14:19:35,046 INFO quick_adcp --------------------------------------------- 2019-11-19 14:19:35,046 INFO quick_adcp writing "cruise_info.txt" 2019-11-19 14:19:35,087 INFO run_quick copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2019-11-19 14:19:35,087 INFO run_quick copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2019-11-19 14:19:35,087 DEBUG run_quick matfile is contour/contour_uv.mat 2019-11-19 14:19:35,092 INFO run_quick copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2019-11-19 14:19:35,092 DEBUG run_quick matfile is vector/vector_uv.mat 2019-11-19 14:19:35,092 INFO run_quick copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2019-11-19 14:19:35,093 DEBUG run_quick matfile is contour/contour_xy.mat 2019-11-19 14:19:35,093 INFO run_quick copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2019-11-19 14:19:35,093 DEBUG run_quick matfile is vector/vector_xy.mat 2019-11-19 14:19:35,094 INFO run_quick copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2019-11-19 14:19:35,094 DEBUG run_quick about to copy file edit/a_oc.tem to /home/adcp/www/data/wh300_temp.asc 2019-11-19 14:19:35,095 INFO run_quick copying edit/a_oc.tem to /home/adcp/www/data/wh300_temp.asc 2019-11-19 14:19:35,899 DEBUG run_quick about to copy netcdf file /home/data/oc1911a/proc/wh300/contour/wh300.nc to /home/adcp/www/data/wh300.nc 2019-11-19 14:19:35,911 INFO run_quick copying /home/data/oc1911a/proc/wh300/contour/wh300.nc to /home/adcp/www/data/wh300.nc 2019-11-19 14:19:35,911 INFO run_quick nc_compressed: ddstep is 1 2019-11-19 14:19:36,038 INFO run_quick success: made compressed nc file /home/adcp/uhdas_tmp/wh300_compr.nc 2019-11-19 14:19:36,113 INFO run_quick generating pingstats for wh300 2019-11-19 14:19:36,113 INFO run_quick Ending quick_adcp.py