2021-07-20 22:10:18,940 DEBUG run_quick about to write control file parameters to --yearbase 2021 --cruisename SR2105 --configtype python --sonar os150nb --dbname a_sr --datatype uhdas --cfgpath /home/data/SR2105/proc/os150nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea #offset between transducer and gps, applied in at-sea processing # NOTE : read special instructions to change offsets # diagnostics in cal/watertrk/guess_xducerxy.out # parameters used: --xducer_dx -3 --xducer_dy 9 ## see config/SR2105_proc.py for other settings --skip_avg ## see above --max_search_depth 1000 --ping_headcorr --proc_engine python --refuv_smoothwin 3 --incremental --top_plotbin 1 --auto 2021-07-20 22:10:19,016 DEBUG quick_adcp sys.argv = /usr/local/currents/bin/run_quick.py -d os150nb 2021-07-20 22:10:19,018 DEBUG quick_setup found cruise_info.hcorr (seapath, sea, 0) 2021-07-20 22:10:19,018 DEBUG quick_setup no heading correction will be used within the ensembles but values are staged in cal/rotate/hcorr.asc 2021-07-20 22:10:19,019 INFO quick_setup fix file is a_sr.gps 2021-07-20 22:10:19,019 INFO quick_setup reflayer: ref_method = refsm 2021-07-20 22:10:19,019 INFO quick_setup reflayer: refuv_source = nav 2021-07-20 22:10:19,019 INFO quick_setup reflayer: refuv_smoothwin = 3 2021-07-20 22:10:19,020 INFO quick_adcp ===================================================== 2021-07-20 22:10:19,020 INFO quick_adcp ===================================================== 2021-07-20 22:10:19,020 INFO quick_adcp command line was: /usr/local/currents/bin/run_quick.py -d os150nb 2021-07-20 22:10:19,020 INFO quick_adcp cwd is /mnt/md0/data/SR2105/proc/os150nb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2021-07-20 22:10:19,020 DEBUG quick_asect extracting matlab files for os150nb 2021-07-20 22:10:19,022 DEBUG quick_setup data directory: /home/data/SR2105/raw/os150 2021-07-20 22:10:19,022 INFO quick_setup found 23 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/SR2105/raw/os150/*.raw" 2021-07-20 22:10:19,022 INFO quick_setup presently in scan, writing filelist to /mnt/md0/data/SR2105/proc/os150nb/ping/datafile_list.txt 2021-07-20 22:10:19,022 INFO quick_setup found 23 raw data files 2021-07-20 22:10:19,023 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/SR2105/raw/os150/sr2021_199_15003.raw ... 2021-07-20 22:10:19,023 DEBUG quick_adcp Tue Jul 20 22:10:19 2021 running: /usr/local/currents/bin/run_quick.py -d os150nb ----- adcpsect variables ------ cbasename contour dbname a_sr dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375] firstdepth 15 gridnum 80 increment 5 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2021 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beam_order None beamangle 30 bl_half_width 3 btrk_step 1.5 cfgpath /home/data/SR2105/proc/os150nb/config cntfile /home/data/SR2105/proc/os150nb/os150nb_qpy.cnt commands None configtype python cruisename SR2105 data_def vmadcp.def data_filelist /mnt/md0/data/SR2105/proc/os150nb/ping/datafile_list.txt datadir /home/data/SR2105/raw/os150 datafile_glob *.raw datatype uhdas dbname a_sr dday_bailout None debug False ens_len 300 expert None filelist ['/home/data/SR2105/raw/os150/sr2021_199_15003.raw', '/home/data/SR2105/raw/os150/sr2021_199_21600.raw', '/home/data/SR2105/raw/os150/sr2021_199_28800.raw', '/home/data/SR2105/raw/os150/sr2021_199_36000.raw', '/home/data/SR2105/raw/os150/sr2021_199_43200.raw', '/home/data/SR2105/raw/os150/sr2021_199_50400.raw', '/home/data/SR2105/raw/os150/sr2021_199_57600.raw', '/home/data/SR2105/raw/os150/sr2021_199_64800.raw', '/home/data/SR2105/raw/os150/sr2021_199_72000.raw', '/home/data/SR2105/raw/os150/sr2021_199_79200.raw', '/home/data/SR2105/raw/os150/sr2021_200_00000.raw', '/home/data/SR2105/raw/os150/sr2021_200_07200.raw', '/home/data/SR2105/raw/os150/sr2021_200_14400.raw', '/home/data/SR2105/raw/os150/sr2021_200_21600.raw', '/home/data/SR2105/raw/os150/sr2021_200_28800.raw', '/home/data/SR2105/raw/os150/sr2021_200_36000.raw', '/home/data/SR2105/raw/os150/sr2021_200_43200.raw', '/home/data/SR2105/raw/os150/sr2021_200_50400.raw', '/home/data/SR2105/raw/os150/sr2021_200_57600.raw', '/home/data/SR2105/raw/os150/sr2021_200_64800.raw', '/home/data/SR2105/raw/os150/sr2021_200_70923.raw', '/home/data/SR2105/raw/os150/sr2021_200_72000.raw', '/home/data/SR2105/raw/os150/sr2021_200_79200.raw'] filter_hwidth 0.0208 find_pflags False firstdepth 15 fixfile a_sr.gps fixfilexy a_sr.agt frequency 150 gbin_gap_sec 15 hcorr_inst seapath help False incremental True instname os150 jitter 15 max_BLKprofiles 300 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 mixed_pings False model os nosave_editcfg 0 numbins 128 pgmin 50 ping_headcorr True pingpref None pingtype nb printformats png proc_engine python proc_yearbase 2021 procdir /mnt/md0/data/SR2105/proc/os150nb py_gbindirbase /home/data/SR2105/gbin ref_method refsm refuv_inputfile a_sr.agt refuv_smoothwin 3 refuv_source nav rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 save_lastens 0 skip_avg True sonar os150nb steps2rerun sum_xducer_dx -3 sum_xducer_dy 9 time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 top_plotbin 1 tuv_file refsm_tuv.asc txy_file a_sr.agt ub_type 1920 uhdas_config yearbase = 2021 uhdas_dir = /home/data/SR2105 sonar = os150nb gbin = /home/data/SR2105/gbin gbinsonar = /home/data/SR2105/gbin/os150 raw = /home/data/SR2105/raw rawsonar = /home/data/SR2105/raw/os150 rbin = /home/data/SR2105/rbin proc = /home/data/SR2105/proc procsonar = /home/data/SR2105/proc/os150nb other attributes: gbin_params = hdg_inst : hydrins hdg_inst_msgs : [('hydrins', 'hdg'), ('seapath', 'sea'), ('trimble', 'hdg'), ('hemisphere', 'hdg')] hdg_msg : hdg pitch_inst : seapath pitch_msg : sea pos_inst : hydrins pos_msg : gps roll_inst : seapath roll_msg : sea hcorr = ['seapath', 'sea', 0.0] acc_heading_cutoff = 0.02 update_gbin False use_rbins False uvwref_end None uvwref_start None vardoc False varvals False wtrk_step 7 xducer_dx -3 xducer_dy 9 yearbase 2021 configured to run the following steps: write_clearflags scandata avg_and_load codaseditsetup setflags getnav lst_hdg plot_headcorr navsteps lst_temp plot_temp lst_npings calib matfiles adcpsect refabs smoothnav putnav refplots codaseditsetup 2021-07-20 22:10:19,023 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,023 INFO quick_adcp step 1: set up files in "edit" directory 2021-07-20 22:10:19,023 INFO quick_run file exists (edit/clearflags.tmp). not writing 2021-07-20 22:10:19,023 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,023 INFO quick_adcp step 2: scan files for time range 2021-07-20 22:10:19,023 DEBUG quick_npy Starting: scanping 2021-07-20 22:10:19,038 DEBUG quick_npy Ending: scanping 2021-07-20 22:10:19,040 DEBUG quick_subs start_end_time 2021/07/19 04:10:05 to 2021/07/19 04:15:16 2021-07-20 22:10:19,040 DEBUG quick_subs dd0: 199.173669 dd1: 199.177269 2021-07-20 22:10:19,041 DEBUG quick_subs running external command "lstblock adcpdb/a_sr adcpdb/a_sr.lst" 2021-07-20 22:10:19,044 DEBUG quick_subs lstblock ran successfully. 2021-07-20 22:10:19,045 DEBUG quick_subs start_end_time 2021/07/19 04:15:04 to 2021/07/20 22:05:04 2021-07-20 22:10:19,045 DEBUG quick_subs dd0: 199.177130 dd1: 200.920185 2021-07-20 22:10:19,045 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2021-07-20 22:10:19,045 DEBUG quick_adcp origdb_time_range is 2021/07/19 04:15:04 to 2021/07/20 22:05:04 2021-07-20 22:10:19,045 DEBUG quick_adcp (199.177130 to 200.920185) 2021-07-20 22:10:19,045 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,045 INFO quick_adcp step 3: generate averaged data... 2021-07-20 22:10:19,045 INFO quick_run file load/ping_editparams.txt exists. not replacing 2021-07-20 22:10:19,045 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,045 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/load 2021-07-20 22:10:19,045 DEBUG quick_setup running python command "run_pingavg_npy" 2021-07-20 22:10:19,045 DEBUG quick_npy Starting: pingavg 2021-07-20 22:10:19,046 DEBUG quick_npy xducerxy is [-3, 9] 2021-07-20 22:10:19,046 DEBUG quick_npy uvwref is None 2021-07-20 22:10:19,047 DEBUG quick_npy singleping editing parameters: 2021-07-20 22:10:19,047 DEBUG quick_npy ecutoff : 0.800000 2021-07-20 22:10:19,047 DEBUG quick_npy cor_cutoff : 120 2021-07-20 22:10:19,047 DEBUG quick_npy weakprof_percent : 30 2021-07-20 22:10:19,047 DEBUG quick_npy rl_startbin : 2 2021-07-20 22:10:19,047 DEBUG quick_npy rl_endbin : 20 2021-07-20 22:10:19,047 DEBUG quick_npy refavg_valcutoff : 1 2021-07-20 22:10:19,047 DEBUG quick_npy ampfilt : 40 2021-07-20 22:10:19,047 DEBUG quick_npy max_search_depth : 1000 2021-07-20 22:10:19,047 DEBUG quick_npy bigtarget_ampthresh : 55 2021-07-20 22:10:19,047 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2021-07-20 22:10:19,047 DEBUG quick_npy bigtarget_mab_window : 11 2021-07-20 22:10:19,049 INFO pingavg ---------------- 2021-07-20 22:10:19,049 INFO pingavg sonar is os150nb 2021-07-20 22:10:19,049 INFO pingavg Pingavg.run for time range 200.916675 to 200.923791 2021-07-20 22:10:19,049 INFO pingavg transducer offset: xducer_dx = -3.000, xducer_dy = 9.000 2021-07-20 22:10:19,049 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2021-07-20 22:10:19,049 INFO pingavg ---------------- 2021-07-20 22:10:19,052 DEBUG pingavg Chunk 1 of 1, 200.916675 to 200.923791 2021-07-20 22:10:19,052 DEBUG pingavg Nothing written 2021-07-20 22:10:19,052 DEBUG quick_npy wrote 0 averages 2021-07-20 22:10:19,052 DEBUG quick_npy Ending: pingavg 2021-07-20 22:10:19,052 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,052 INFO quick_adcp step 4: load averaged data (to database) 2021-07-20 22:10:19,053 DEBUG quick_subs in del_overlapping: lastblock: 2 lastcmd: 2 delblks: [2] loadblks: [2] 2021-07-20 22:10:19,053 DEBUG quick_subs blockfiles remain; running mkblkdir 2021-07-20 22:10:19,053 DEBUG quick_subs running mkblkdir adcpdb/mkblkdir.tmp 2021-07-20 22:10:19,056 DEBUG quick_run [2] 2021-07-20 22:10:19,056 DEBUG quick_run cmdlist 2021-07-20 22:10:19,056 DEBUG quick_run ['./ens_blk002.cmd'] 2021-07-20 22:10:19,058 INFO quick_run loaded time range: 2021/07/20 05:15:04 to 2021/07/20 22:10:05 2021-07-20 22:10:19,058 DEBUG quick_setup load/ldcodas.tmp exists 2021-07-20 22:10:19,058 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,058 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/load 2021-07-20 22:10:19,058 DEBUG quick_setup running python command "ldcodas" 2021-07-20 22:10:19,058 DEBUG quick_subs filling "thisload" timerange 2021-07-20 22:10:19,059 DEBUG quick_subs in ldcodas 2021-07-20 22:10:19,059 DEBUG quick_subs cmdlist: 2021-07-20 22:10:19,059 DEBUG quick_subs ['./ens_blk002.cmd'] 2021-07-20 22:10:19,059 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_sr DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2021 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk002.cmd 2021-07-20 22:10:19,059 DEBUG quick_setup about to run ldcodas ldcodas.tmp 2021-07-20 22:10:19,076 INFO quick_run 3 block files present 2021-07-20 22:10:19,076 DEBUG quick_subs running external command "lstblock adcpdb/a_sr adcpdb/a_sr.lst" 2021-07-20 22:10:19,079 DEBUG quick_subs lstblock ran successfully. 2021-07-20 22:10:19,079 DEBUG quick_subs start_end_time 2021/07/19 04:15:04 to 2021/07/20 22:10:05 2021-07-20 22:10:19,080 DEBUG quick_subs dd0: 199.177130 dd1: 200.923669 2021-07-20 22:10:19,080 INFO quick_adcp database time range: 2021-07-20 22:10:19,080 INFO quick_adcp 2021/07/19 04:15:04 to 2021/07/20 22:10:05 2021-07-20 22:10:19,080 INFO quick_adcp (199.177130 to 200.923669) 2021-07-20 22:10:19,080 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,080 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/adcpdb 2021-07-20 22:10:19,080 DEBUG quick_setup running python command "lst_conf" 2021-07-20 22:10:19,080 DEBUG quick_subs dbname: a_sr output: a_sr.cnh time_ranges: all 2021-07-20 22:10:19,080 DEBUG quick_setup about to run lst_conf lst_conf.tmp 2021-07-20 22:10:19,085 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,085 INFO quick_adcp step 5: set up files for codas editing (gautoedit.py) 2021-07-20 22:10:19,085 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2021-07-20 22:10:19,085 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,085 INFO quick_adcp step 6: run setflags? 2021-07-20 22:10:19,085 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,085 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/edit 2021-07-20 22:10:19,085 DEBUG quick_setup running python command "write_setflags" 2021-07-20 22:10:19,085 DEBUG quick_subs dbname: ../adcpdb/a_sr pg_min: 50 set_range_bit time_ranges: all 2021-07-20 22:10:19,086 DEBUG quick_setup about to run setflags setflags.tmp 2021-07-20 22:10:19,091 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,092 INFO quick_adcp step 7: get navigation 2021-07-20 22:10:19,092 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,092 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,092 DEBUG quick_setup running python command "catnav" 2021-07-20 22:10:19,092 INFO quick_subs navigation file nav/a_sr.gps created from load/*.gps2 2021-07-20 22:10:19,093 INFO quick_subs navigation file nav/a_sr.agt created from load/*.gpst2 2021-07-20 22:10:19,093 DEBUG quick_mpl Starting plot: uvship 2021-07-20 22:10:19,298 DEBUG quick_mpl closing 1 2021-07-20 22:10:19,298 DEBUG quick_mpl Ending plot: uvship 2021-07-20 22:10:19,298 INFO quick_run plotted uvship 2021-07-20 22:10:19,299 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,299 INFO quick_adcp step 8: list heading 2021-07-20 22:10:19,299 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2021-07-20 22:10:19,299 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,299 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/cal/rotate 2021-07-20 22:10:19,299 DEBUG quick_setup running python command "lst_hdg" 2021-07-20 22:10:19,299 DEBUG quick_subs dbname: ../../adcpdb/a_sr output: scn.hdg step_size= 1 year_base= 2021 time_ranges: all 2021-07-20 22:10:19,299 DEBUG quick_setup about to run lst_hdg lst_hdg.tmp 2021-07-20 22:10:19,304 INFO quick_run ... headings extracted 2021-07-20 22:10:19,304 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,304 INFO quick_adcp step 9: plot heading correction 2021-07-20 22:10:19,304 DEBUG quick_run hcorr_inst is seapath 2021-07-20 22:10:19,304 DEBUG quick_mpl Starting plot: hcorr 2021-07-20 22:10:19,309 DEBUG quick_mpl found 1.746534 days of data 2021-07-20 22:10:19,309 DEBUG quick_mpl figures with 4 panels per page, 1.000000 days per panel 2021-07-20 22:10:19,309 DEBUG quick_mpl printing 1 pages 2021-07-20 22:10:19,490 DEBUG quick_mpl closing 1 2021-07-20 22:10:19,490 DEBUG quick_mpl Ending plot: hcorr 2021-07-20 22:10:19,490 INFO quick_run plots are in cal/rotate/*png 2021-07-20 22:10:19,490 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,490 INFO quick_adcp ---- running navsteps --- 2021-07-20 22:10:19,490 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,490 INFO quick_adcp step 10: nav steps: run adcpsect 2021-07-20 22:10:19,490 INFO quick_adcp navstep 1 2021-07-20 22:10:19,490 DEBUG quick_setup nav/as_nav.tmp exists 2021-07-20 22:10:19,490 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,490 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,490 DEBUG quick_setup running python command "as_nav" 2021-07-20 22:10:19,490 DEBUG quick_subs dbname: ../adcpdb/a_sr output: a_sr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2021 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2021/07/19 04:15:04 to 2021/07/20 22:10:05 /* the whole time range */ 2021-07-20 22:10:19,491 DEBUG quick_setup about to run adcpsect as_nav.tmp 2021-07-20 22:10:19,498 INFO quick_run ... ran adcpsect for navsteps 2021-07-20 22:10:19,498 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,498 INFO quick_adcp step 11: nav steps: run refabs 2021-07-20 22:10:19,498 INFO quick_adcp navstep 2 2021-07-20 22:10:19,498 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,498 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,498 DEBUG quick_setup running python command "refabs" 2021-07-20 22:10:19,498 DEBUG quick_subs fix_file_type: simple reference_file: a_sr.nav fix_file: a_sr.agt output: a_sr.ref year_base= 2021 ensemble_length= 300 gap_tolerance= 10 2021-07-20 22:10:19,498 DEBUG quick_setup about to run refabs refabs.tmp 2021-07-20 22:10:19,503 INFO quick_run ... ran refabs for navsteps 2021-07-20 22:10:19,504 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,504 INFO quick_adcp step 12: nav steps: run smoothr for plots 2021-07-20 22:10:19,504 INFO quick_adcp navstep 3 2021-07-20 22:10:19,504 DEBUG quick_setup nav/smoothr.tmp exists 2021-07-20 22:10:19,504 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,504 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,504 DEBUG quick_setup running python command "smoothr" 2021-07-20 22:10:19,504 DEBUG quick_subs reference_file: a_sr.nav refabs_output: a_sr.ref output: a_sr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2021-07-20 22:10:19,504 DEBUG quick_setup about to run smoothr smoothr.tmp 2021-07-20 22:10:19,520 INFO quick_run ... ran smoothr 2021-07-20 22:10:19,520 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,520 INFO quick_adcp step 13: nav steps: smooth navigation for velocities 2021-07-20 22:10:19,520 INFO quick_adcp navstep 4 2021-07-20 22:10:19,520 INFO quick_run smoothing method for ship speed: refsm 2021-07-20 22:10:19,520 INFO quick_run smoothing window: 3 2021-07-20 22:10:19,520 INFO quick_run ship speed source: nav 2021-07-20 22:10:19,520 DEBUG quick_npy Starting: refsm 2021-07-20 22:10:19,545 DEBUG quick_npy Ending: refsm 2021-07-20 22:10:19,545 INFO quick_run ... shipspeed smoothing step done 2021-07-20 22:10:19,545 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,545 INFO quick_adcp step 14: nav steps: put positions and uvship from refsm into codasdb 2021-07-20 22:10:19,545 INFO quick_adcp navstep 5 2021-07-20 22:10:19,545 DEBUG quick_setup nav/put_txy.tmp exists 2021-07-20 22:10:19,545 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,545 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,545 DEBUG quick_setup running python command "put_txy" 2021-07-20 22:10:19,545 DEBUG quick_subs dbname: ../adcpdb/a_sr position_file: a_sr.agt year_base= 2021 tolerance= 5 2021-07-20 22:10:19,545 DEBUG quick_setup about to run put_txy put_txy.tmp 2021-07-20 22:10:19,551 INFO quick_run ... ran put_txy 2021-07-20 22:10:19,551 DEBUG quick_setup nav/put_tuv.tmp exists 2021-07-20 22:10:19,551 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,551 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,552 DEBUG quick_setup running python command "put_tuv" 2021-07-20 22:10:19,552 DEBUG quick_subs dbname: ../adcpdb/a_sr shipspeed_file: refsm_tuv.asc year_base= 2021 tolerance= 5 2021-07-20 22:10:19,552 DEBUG quick_setup about to run put_tuv put_tuv.tmp 2021-07-20 22:10:19,558 INFO quick_run ... ran put_tuv 2021-07-20 22:10:19,558 DEBUG quick_mpl Starting plot: nav 2021-07-20 22:10:19,690 DEBUG quick_mpl closing 1 2021-07-20 22:10:19,690 DEBUG quick_mpl Ending plot: nav 2021-07-20 22:10:19,690 INFO quick_run ... made navigation plot 2021-07-20 22:10:19,690 INFO quick_adcp ------------------------- 2021-07-20 22:10:19,690 INFO quick_adcp step 15: nav steps: make reflayer plots 2021-07-20 22:10:19,690 INFO quick_adcp navstep 6 2021-07-20 22:10:19,690 DEBUG quick_mpl Starting plot: refl 2021-07-20 22:10:19,700 DEBUG quick_mpl found 1.743059 days of data 2021-07-20 22:10:19,700 DEBUG quick_mpl start day is 199.000000 2021-07-20 22:10:19,700 DEBUG quick_mpl figures with 2.000000 days per page 2021-07-20 22:10:19,700 DEBUG quick_mpl printing 1 pages 2021-07-20 22:10:19,700 DEBUG quick_mpl yrange will be [1.000000, 1.000000] 2021-07-20 22:10:19,893 DEBUG quick_mpl closing 1 2021-07-20 22:10:19,893 DEBUG quick_mpl Ending plot: refl 2021-07-20 22:10:19,894 INFO quick_run ... made reflayer plots 2021-07-20 22:10:19,894 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:19,894 INFO quick_adcp step 10: run calibration steps 2021-07-20 22:10:19,894 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2021-07-20 22:10:19,894 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,894 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/cal/botmtrk 2021-07-20 22:10:19,894 DEBUG quick_setup running python command "lst_btrk" 2021-07-20 22:10:19,894 DEBUG quick_subs dbname: ../../adcpdb/a_sr output: a_sr.btm step_size= 1 year_base= 2021 time_ranges: 2021/07/19 04:15:04 to 2021/07/20 22:10:05 /* whole time range */ 2021-07-20 22:10:19,894 DEBUG quick_setup about to run lst_btrk lst_btrk.tmp 2021-07-20 22:10:19,898 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2021-07-20 22:10:19,899 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,899 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/cal/botmtrk 2021-07-20 22:10:19,899 DEBUG quick_setup running python command "refabsbt" 2021-07-20 22:10:19,899 DEBUG quick_subs fix_file_type: simple reference_file: a_sr.btm fix_file: ../../nav/a_sr.agt output: a_sr.ref year_base= 2021 ensemble_length= 300 gap_tolerance= 60 2021-07-20 22:10:19,899 DEBUG quick_setup about to run refabsbt refabsbt.tmp 2021-07-20 22:10:19,902 INFO quick_run ...bottom track info in check cal/botmtrk 2021-07-20 22:10:19,903 DEBUG quick_mpl Starting plot: btcal 2021-07-20 22:10:19,903 DEBUG quick_mpl No data in a_sr.btm 2021-07-20 22:10:19,903 DEBUG quick_mpl Returning from Btplot with no output 2021-07-20 22:10:19,903 DEBUG quick_mpl Ending plot: btcal 2021-07-20 22:10:19,904 DEBUG quick_setup nav/as_nav.tmp exists 2021-07-20 22:10:19,904 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,904 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/nav 2021-07-20 22:10:19,904 DEBUG quick_setup running python command "as_nav" 2021-07-20 22:10:19,904 DEBUG quick_subs dbname: ../adcpdb/a_sr output: a_sr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2021 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2021/07/19 04:15:04 to 2021/07/20 22:10:05 /* the whole time range */ 2021-07-20 22:10:19,904 DEBUG quick_setup about to run adcpsect as_nav.tmp 2021-07-20 22:10:19,911 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2021-07-20 22:10:19,911 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:19,911 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/cal/watertrk 2021-07-20 22:10:19,911 DEBUG quick_setup running python command "timslip" 2021-07-20 22:10:19,911 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_sr.agt reference_file: ../../nav/a_sr.nav output_file: a_sr_7.cal year_base= 2021 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2021-07-20 22:10:19,911 DEBUG quick_setup about to run timslip timslip.tmp 2021-07-20 22:10:19,915 INFO quick_run ... watertrack info in cal/watertrk 2021-07-20 22:10:19,915 DEBUG quick_mpl Starting plot: wtcal 2021-07-20 22:10:19,916 DEBUG quick_mpl Found 19 calibration points 2021-07-20 22:10:20,099 DEBUG quick_mpl closing 1 2021-07-20 22:10:20,315 DEBUG quick_mpl closing 1 2021-07-20 22:10:20,315 DEBUG quick_mpl Ending plot: wtcal 2021-07-20 22:10:20,315 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,315 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/cal/watertrk 2021-07-20 22:10:20,315 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2021-07-20 22:10:20,315 DEBUG quick_npy Starting: guess_xducerxy 2021-07-20 22:10:20,333 DEBUG quick_npy Ending: guess_xducerxy 2021-07-20 22:10:20,333 INFO quick_run ... check cal/watertrk for estimate 2021-07-20 22:10:20,333 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:20,333 INFO quick_adcp step 11: extract and plot temperature 2021-07-20 22:10:20,333 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,333 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/edit 2021-07-20 22:10:20,334 DEBUG quick_setup running python command "lst_temp" 2021-07-20 22:10:20,334 DEBUG quick_subs dbname: ../adcpdb/a_sr output: a_sr.tem step_size= 1 year_base= 2021 time_ranges: all 2021-07-20 22:10:20,334 DEBUG quick_setup about to run lst_temp lst_temp.tmp 2021-07-20 22:10:20,340 DEBUG quick_mpl Starting plot: temp 2021-07-20 22:10:20,344 DEBUG quick_mpl plotting 504 points 2021-07-20 22:10:20,438 DEBUG quick_mpl closing 1 2021-07-20 22:10:20,438 DEBUG quick_mpl Ending plot: temp 2021-07-20 22:10:20,438 INFO quick_run plotted temperature 2021-07-20 22:10:20,438 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:20,438 INFO quick_adcp step 12: extract and plot number of pings per ensemble 2021-07-20 22:10:20,438 DEBUG quick_setup edit/lst_npings.tmp exists 2021-07-20 22:10:20,438 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,438 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/edit 2021-07-20 22:10:20,438 DEBUG quick_setup running python command "lst_npings" 2021-07-20 22:10:20,438 DEBUG quick_subs dbname: ../adcpdb/a_sr output: a_sr_npings.txt step_size= 1 year_base= 2021 time_ranges: all 2021-07-20 22:10:20,438 DEBUG quick_setup about to run lst_npings lst_npings.tmp 2021-07-20 22:10:20,444 DEBUG quick_mpl Starting plot: npings 2021-07-20 22:10:20,447 DEBUG quick_mpl plotting 504 points 2021-07-20 22:10:20,508 DEBUG quick_mpl closing 1 2021-07-20 22:10:20,509 DEBUG quick_mpl Ending plot: npings 2021-07-20 22:10:20,509 INFO quick_run ... plotted number of pings per ensemble 2021-07-20 22:10:20,509 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:20,509 INFO quick_adcp step 13: extract matlab "allbins" 2021-07-20 22:10:20,509 DEBUG quick_asect step 18: make matlab files for plotting 2021-07-20 22:10:20,509 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,509 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/vector 2021-07-20 22:10:20,509 DEBUG quick_setup running python command "timegrid" 2021-07-20 22:10:20,509 DEBUG quick_setup about to run timegrid a_sr.tmp 2021-07-20 22:10:20,513 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,513 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/vector 2021-07-20 22:10:20,513 DEBUG quick_setup running python command "as_vect" 2021-07-20 22:10:20,513 DEBUG quick_setup about to run adcpsect as_vect.tmp 2021-07-20 22:10:20,523 DEBUG quick_asect done making vector matfiles 2021-07-20 22:10:20,523 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,523 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/contour 2021-07-20 22:10:20,523 DEBUG quick_setup running python command "timegrid" 2021-07-20 22:10:20,523 DEBUG quick_setup about to run timegrid a_sr.tmp 2021-07-20 22:10:20,528 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,528 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/contour 2021-07-20 22:10:20,528 DEBUG quick_setup running python command "as_cont" 2021-07-20 22:10:20,528 DEBUG quick_setup about to run adcpsect as_cont.tmp 2021-07-20 22:10:20,546 DEBUG quick_setup starting in /mnt/md0/data/SR2105/proc/os150nb 2021-07-20 22:10:20,547 DEBUG quick_setup executing commands from /mnt/md0/data/SR2105/proc/os150nb/contour 2021-07-20 22:10:20,547 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_sr 2021-07-20 22:10:20,563 DEBUG quick_asect done running getmat with "allbins" 2021-07-20 22:10:20,564 INFO quick_adcp --------------------------------------------- 2021-07-20 22:10:20,564 INFO quick_adcp writing "cruise_info.txt" 2021-07-20 22:10:20,565 INFO run_quick copying NOFIG to /home/adcp/www/figures/os150nb_hcorr_plot.png 2021-07-20 22:10:20,565 INFO run_quick copying NOFIG to /home/adcp/www/figures/thumbnails/os150nb_hcorr_plot_thumb.png 2021-07-20 22:10:20,565 DEBUG run_quick matfile is contour/contour_uv.mat 2021-07-20 22:10:20,565 INFO run_quick copying contour/contour_uv.mat to /home/adcp/www/data/os150nb_cont_uv.mat 2021-07-20 22:10:20,565 DEBUG run_quick matfile is vector/vector_uv.mat 2021-07-20 22:10:20,565 INFO run_quick copying vector/vector_uv.mat to /home/adcp/www/data/os150nb_vect_uv.mat 2021-07-20 22:10:20,566 DEBUG run_quick matfile is contour/contour_xy.mat 2021-07-20 22:10:20,566 INFO run_quick copying contour/contour_xy.mat to /home/adcp/www/data/os150nb_cont_xy.mat 2021-07-20 22:10:20,566 DEBUG run_quick matfile is vector/vector_xy.mat 2021-07-20 22:10:20,566 INFO run_quick copying vector/vector_xy.mat to /home/adcp/www/data/os150nb_vect_xy.mat 2021-07-20 22:10:20,566 DEBUG run_quick about to copy file edit/a_sr.tem to /home/adcp/www/data/os150nb_temp.asc 2021-07-20 22:10:20,566 INFO run_quick copying edit/a_sr.tem to /home/adcp/www/data/os150nb_temp.asc 2021-07-20 22:10:20,617 DEBUG run_quick about to copy netcdf file /home/data/SR2105/proc/os150nb/contour/os150nb.nc to /home/adcp/www/data/os150nb.nc 2021-07-20 22:10:20,618 INFO run_quick copying /home/data/SR2105/proc/os150nb/contour/os150nb.nc to /home/adcp/www/data/os150nb.nc 2021-07-20 22:10:20,618 INFO run_quick nc_compressed: ddstep is 1 2021-07-20 22:10:20,655 INFO run_quick success: made compressed nc file /home/adcp/uhdas_tmp/os150nb_compr.nc 2021-07-20 22:10:20,662 INFO run_quick generating pingstats for os150nb 2021-07-20 22:10:20,662 INFO run_quick Ending quick_adcp.py