2022-04-28 05:22:15,798 DEBUG run_quick about to write control file parameters to --yearbase 2022 --cruisename SH2204_CalCOFI --configtype python --sonar os75nb --dbname a_sh --datatype uhdas --cfgpath /home/data/SH2204_CalCOFI/proc/os75nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea #offset between transducer and gps, applied in at-sea processing # NOTE : read special instructions to change offsets # diagnostics in cal/watertrk/guess_xducerxy.out # parameters used: --xducer_dx -1 --xducer_dy 26 ## see config/SH2204_CalCOFI_proc.py for other settings --skip_avg ## see above --max_search_depth 2000 --ping_headcorr --proc_engine python --refuv_smoothwin 3 --incremental --top_plotbin 1 --auto 2022-04-28 05:22:15,799 DEBUG quick_adcp sys.argv = /usr/local/currents/bin/run_quick.py -d os75nb 2022-04-28 05:22:15,800 DEBUG quick_setup found cruise_info.hcorr (posmv, pmv, -1) 2022-04-28 05:22:15,800 DEBUG quick_setup no heading correction will be used within the ensembles but values are staged in cal/rotate/hcorr.asc 2022-04-28 05:22:15,800 INFO quick_setup fix file is a_sh.gps 2022-04-28 05:22:15,800 INFO quick_setup reflayer: ref_method = refsm 2022-04-28 05:22:15,800 INFO quick_setup reflayer: refuv_source = nav 2022-04-28 05:22:15,800 INFO quick_setup reflayer: refuv_smoothwin = 3 2022-04-28 05:22:15,800 INFO quick_adcp ===================================================== 2022-04-28 05:22:15,800 INFO quick_adcp ===================================================== 2022-04-28 05:22:15,800 INFO quick_adcp command line was: /usr/local/currents/bin/run_quick.py -d os75nb 2022-04-28 05:22:15,801 INFO quick_adcp cwd is /home/data/SH2204_CalCOFI/proc/os75nb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2022-04-28 05:22:15,801 DEBUG quick_asect extracting matlab files for os75nb 2022-04-28 05:22:15,813 DEBUG quick_setup data directory: /home/data/SH2204_CalCOFI/raw/os75 2022-04-28 05:22:15,815 INFO quick_setup found 254 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/SH2204_CalCOFI/raw/os75/*.raw" 2022-04-28 05:22:15,816 INFO quick_setup presently in scan, writing filelist to /home/data/SH2204_CalCOFI/proc/os75nb/ping/datafile_list.txt 2022-04-28 05:22:15,816 INFO quick_setup found 254 raw data files 2022-04-28 05:22:15,816 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/SH2204_CalCOFI/raw/os75/sh2022_095_70684.raw ... 2022-04-28 05:22:15,817 DEBUG quick_adcp Thu Apr 28 05:22:15 2022 running: /usr/local/currents/bin/run_quick.py -d os75nb ----- adcpsect variables ------ cbasename contour dbname a_sh dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 20 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2022 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 bl_half_width 3 btrk_step 1.5 cfgpath /home/data/SH2204_CalCOFI/proc/os75nb/config cntfile /home/data/SH2204_CalCOFI/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename SH2204_CalCOFI data_def vmadcp.def data_filelist /home/data/SH2204_CalCOFI/proc/os75nb/ping/datafile_list.txt datadir /home/data/SH2204_CalCOFI/raw/os75 datafile_glob *.raw datatype uhdas dbname a_sh dday_bailout None debug False ens_len 300 expert None filelist ['/home/data/SH2204_CalCOFI/raw/os75/sh2022_095_70684.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_095_71525.raw', 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'/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_21600.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_28800.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_36000.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_43200.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_50400.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_57600.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_64800.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_72000.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_116_79200.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_117_00000.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_117_07200.raw', '/home/data/SH2204_CalCOFI/raw/os75/sh2022_117_14400.raw'] filter_hwidth 0.0208 find_pflags False firstdepth 20 fixfile a_sh.gps fixfilexy a_sh.agt frequency 75 hcorr_inst posmv help False incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 2000 maxrunsecs None min_filter_fraction 0.5 mixed_pings False model os nosave_editcfg 0 numbins 128 pgmin 50 ping_headcorr True pingpref None pingtype nb printformats png proc_engine python proc_yearbase 2022 procdir /home/data/SH2204_CalCOFI/proc/os75nb py_gbindirbase /home/data/SH2204_CalCOFI/gbin ref_method refsm refuv_inputfile a_sh.agt refuv_smoothwin 3 refuv_source nav rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 save_lastens 0 skip_avg True sonar os75nb steps2rerun sum_xducer_dx -1 sum_xducer_dy 26 time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 top_plotbin 1 tuv_file refsm_tuv.asc txy_file a_sh.agt ub_type 1920 uhdas_config yearbase = 2022 uhdas_dir = /home/data/SH2204_CalCOFI sonar = os75nb gbin = /home/data/SH2204_CalCOFI/gbin gbinsonar = /home/data/SH2204_CalCOFI/gbin/os75 raw = /home/data/SH2204_CalCOFI/raw rawsonar = /home/data/SH2204_CalCOFI/raw/os75 rbin = /home/data/SH2204_CalCOFI/rbin proc = /home/data/SH2204_CalCOFI/proc procsonar = /home/data/SH2204_CalCOFI/proc/os75nb other attributes: gbin_params = hdg_inst : quadrans hdg_inst_msgs : [('quadrans', 'hdg'), ('posmv', 'pmv')] hdg_msg : hdg pitch_inst : posmv pitch_msg : pmv pos_inst : gpsnav pos_msg : gps roll_inst : posmv roll_msg : pmv hcorr = ['posmv', 'pmv', -1.9] acc_heading_cutoff = 0.02 update_gbin False use_rbins False uvwref_end None uvwref_start None vardoc False varvals False wtrk_step 7 xducer_dx -1 xducer_dy 26 yearbase 2022 configured to run the following steps: write_clearflags scandata avg_and_load codaseditsetup setflags getnav lst_hdg plot_headcorr navsteps lst_temp plot_temp lst_npings calib matfiles adcpsect refabs smoothnav putnav refplots codaseditsetup 2022-04-28 05:22:15,817 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:15,817 INFO quick_adcp step 1: set up files in "edit" directory 2022-04-28 05:22:15,817 INFO quick_run file exists (edit/clearflags.tmp). not writing 2022-04-28 05:22:15,817 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:15,817 INFO quick_adcp step 2: scan files for time range 2022-04-28 05:22:15,817 DEBUG quick_npy Starting: scanping 2022-04-28 05:22:15,986 DEBUG quick_npy Ending: scanping 2022-04-28 05:22:15,988 DEBUG quick_subs start_end_time 2022/04/06 19:38:06 to 2022/04/06 19:39:12 2022-04-28 05:22:15,988 DEBUG quick_subs dd0: 95.818125 dd1: 95.818889 2022-04-28 05:22:15,988 DEBUG quick_subs running external command "lstblock adcpdb/a_sh adcpdb/a_sh.lst" 2022-04-28 05:22:15,992 DEBUG quick_subs lstblock ran successfully. 2022-04-28 05:22:15,993 DEBUG quick_subs start_end_time 2022/04/06 19:39:12 to 2022/04/28 05:17:02 2022-04-28 05:22:15,993 DEBUG quick_subs dd0: 95.818889 dd1: 117.220162 2022-04-28 05:22:15,993 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2022-04-28 05:22:15,993 DEBUG quick_adcp origdb_time_range is 2022/04/06 19:39:12 to 2022/04/28 05:17:02 2022-04-28 05:22:15,993 DEBUG quick_adcp (95.818889 to 117.220162) 2022-04-28 05:22:15,993 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:15,993 INFO quick_adcp step 3: generate averaged data... 2022-04-28 05:22:15,993 INFO quick_run file load/ping_editparams.txt exists. not replacing 2022-04-28 05:22:15,993 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:15,993 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/load 2022-04-28 05:22:15,993 DEBUG quick_setup running python command "run_pingavg_npy" 2022-04-28 05:22:15,993 DEBUG quick_npy Starting: pingavg 2022-04-28 05:22:15,995 DEBUG quick_npy xducerxy is [-1, 26] 2022-04-28 05:22:15,995 DEBUG quick_npy uvwref is None 2022-04-28 05:22:15,995 DEBUG quick_npy singleping editing parameters: 2022-04-28 05:22:15,995 DEBUG quick_npy ecutoff : 0.800000 2022-04-28 05:22:15,995 DEBUG quick_npy cor_cutoff : 120 2022-04-28 05:22:15,995 DEBUG quick_npy weakprof_percent : 30 2022-04-28 05:22:15,995 DEBUG quick_npy rl_startbin : 2 2022-04-28 05:22:15,995 DEBUG quick_npy rl_endbin : 20 2022-04-28 05:22:15,995 DEBUG quick_npy refavg_valcutoff : 1 2022-04-28 05:22:15,995 DEBUG quick_npy ampfilt : 40 2022-04-28 05:22:15,995 DEBUG quick_npy max_search_depth : 2000 2022-04-28 05:22:15,995 DEBUG quick_npy bigtarget_ampthresh : 55 2022-04-28 05:22:15,995 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2022-04-28 05:22:15,995 DEBUG quick_npy bigtarget_mab_window : 11 2022-04-28 05:22:16,000 INFO pingavg ---------------- 2022-04-28 05:22:16,000 INFO pingavg sonar is os75nb 2022-04-28 05:22:16,000 INFO pingavg Pingavg.run for time range 117.166675 to 117.223727 2022-04-28 05:22:16,001 INFO pingavg transducer offset: xducer_dx = -1.000, xducer_dy = 26.000 2022-04-28 05:22:16,001 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2022-04-28 05:22:16,001 INFO pingavg ---------------- 2022-04-28 05:22:16,003 DEBUG pingavg Chunk 1 of 1, 117.166675 to 117.223727 2022-04-28 05:22:16,003 DEBUG pingavg Nothing written 2022-04-28 05:22:16,003 DEBUG quick_npy wrote 0 averages 2022-04-28 05:22:16,004 DEBUG quick_npy Ending: pingavg 2022-04-28 05:22:16,004 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,004 INFO quick_adcp step 4: load averaged data (to database) 2022-04-28 05:22:16,004 DEBUG quick_subs in del_overlapping: lastblock: 22 lastcmd: 22 delblks: [22] loadblks: [22] 2022-04-28 05:22:16,005 DEBUG quick_subs blockfiles remain; running mkblkdir 2022-04-28 05:22:16,005 DEBUG quick_subs running mkblkdir adcpdb/mkblkdir.tmp 2022-04-28 05:22:16,008 DEBUG quick_run [22] 2022-04-28 05:22:16,008 DEBUG quick_run cmdlist 2022-04-28 05:22:16,008 DEBUG quick_run ['./ens_blk022.cmd'] 2022-04-28 05:22:16,010 INFO quick_run loaded time range: 2022/04/27 17:02:00 to 2022/04/28 05:22:01 2022-04-28 05:22:16,010 DEBUG quick_setup load/ldcodas.tmp exists 2022-04-28 05:22:16,010 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,010 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/load 2022-04-28 05:22:16,010 DEBUG quick_setup running python command "ldcodas" 2022-04-28 05:22:16,010 DEBUG quick_subs filling "thisload" timerange 2022-04-28 05:22:16,011 DEBUG quick_subs in ldcodas 2022-04-28 05:22:16,011 DEBUG quick_subs cmdlist: 2022-04-28 05:22:16,011 DEBUG quick_subs ['./ens_blk022.cmd'] 2022-04-28 05:22:16,011 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_sh DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2022 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk022.cmd 2022-04-28 05:22:16,011 DEBUG quick_setup about to run ldcodas ldcodas.tmp 2022-04-28 05:22:16,024 INFO quick_run 23 block files present 2022-04-28 05:22:16,024 DEBUG quick_subs running external command "lstblock adcpdb/a_sh adcpdb/a_sh.lst" 2022-04-28 05:22:16,028 DEBUG quick_subs lstblock ran successfully. 2022-04-28 05:22:16,028 DEBUG quick_subs start_end_time 2022/04/06 19:39:12 to 2022/04/28 05:22:01 2022-04-28 05:22:16,028 DEBUG quick_subs dd0: 95.818889 dd1: 117.223623 2022-04-28 05:22:16,028 INFO quick_adcp database time range: 2022-04-28 05:22:16,028 INFO quick_adcp 2022/04/06 19:39:12 to 2022/04/28 05:22:01 2022-04-28 05:22:16,029 INFO quick_adcp (95.818889 to 117.223623) 2022-04-28 05:22:16,029 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,029 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/adcpdb 2022-04-28 05:22:16,029 DEBUG quick_setup running python command "lst_conf" 2022-04-28 05:22:16,029 DEBUG quick_subs dbname: a_sh output: a_sh.cnh time_ranges: all 2022-04-28 05:22:16,029 DEBUG quick_setup about to run lst_conf lst_conf.tmp 2022-04-28 05:22:16,044 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,044 INFO quick_adcp step 5: set up files for codas editing (gautoedit.py) 2022-04-28 05:22:16,044 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2022-04-28 05:22:16,044 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,044 INFO quick_adcp step 6: run setflags? 2022-04-28 05:22:16,045 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,045 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/edit 2022-04-28 05:22:16,045 DEBUG quick_setup running python command "write_setflags" 2022-04-28 05:22:16,045 DEBUG quick_subs dbname: ../adcpdb/a_sh pg_min: 50 set_range_bit time_ranges: all 2022-04-28 05:22:16,045 DEBUG quick_setup about to run setflags setflags.tmp 2022-04-28 05:22:16,083 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,083 INFO quick_adcp step 7: get navigation 2022-04-28 05:22:16,083 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,083 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:16,083 DEBUG quick_setup running python command "catnav" 2022-04-28 05:22:16,085 INFO quick_subs navigation file nav/a_sh.gps created from load/*.gps2 2022-04-28 05:22:16,087 INFO quick_subs navigation file nav/a_sh.agt created from load/*.gpst2 2022-04-28 05:22:16,090 DEBUG quick_mpl Starting plot: uvship 2022-04-28 05:22:16,405 DEBUG quick_mpl closing 1 2022-04-28 05:22:16,405 DEBUG quick_mpl Ending plot: uvship 2022-04-28 05:22:16,405 INFO quick_run plotted uvship 2022-04-28 05:22:16,405 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,405 INFO quick_adcp step 8: list heading 2022-04-28 05:22:16,405 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2022-04-28 05:22:16,405 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,405 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/cal/rotate 2022-04-28 05:22:16,405 DEBUG quick_setup running python command "lst_hdg" 2022-04-28 05:22:16,405 DEBUG quick_subs dbname: ../../adcpdb/a_sh output: scn.hdg step_size= 1 year_base= 2022 time_ranges: all 2022-04-28 05:22:16,406 DEBUG quick_setup about to run lst_hdg lst_hdg.tmp 2022-04-28 05:22:16,427 INFO quick_run ... headings extracted 2022-04-28 05:22:16,427 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:16,427 INFO quick_adcp step 9: plot heading correction 2022-04-28 05:22:16,427 DEBUG quick_run hcorr_inst is posmv 2022-04-28 05:22:16,428 DEBUG quick_mpl Starting plot: hcorr 2022-04-28 05:22:16,481 DEBUG quick_mpl found 21.404731 days of data 2022-04-28 05:22:16,481 DEBUG quick_mpl figures with 4 panels per page, 1.000000 days per panel 2022-04-28 05:22:16,481 DEBUG quick_mpl printing 6 pages 2022-04-28 05:22:16,658 DEBUG quick_mpl closing 1 2022-04-28 05:22:16,827 DEBUG quick_mpl closing 1 2022-04-28 05:22:16,827 DEBUG quick_mpl Ending plot: hcorr 2022-04-28 05:22:16,827 INFO quick_run plots are in cal/rotate/*png 2022-04-28 05:22:16,827 INFO quick_adcp ------------------------- 2022-04-28 05:22:16,827 INFO quick_adcp ---- running navsteps --- 2022-04-28 05:22:16,827 INFO quick_adcp ------------------------- 2022-04-28 05:22:16,828 INFO quick_adcp step 10: nav steps: run adcpsect 2022-04-28 05:22:16,828 INFO quick_adcp navstep 1 2022-04-28 05:22:16,828 DEBUG quick_setup nav/as_nav.tmp exists 2022-04-28 05:22:16,828 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,828 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:16,828 DEBUG quick_setup running python command "as_nav" 2022-04-28 05:22:16,828 DEBUG quick_subs dbname: ../adcpdb/a_sh output: a_sh step_size: 1 ndepth: 20 time_ranges: separate year_base= 2022 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2022/04/06 19:39:12 to 2022/04/28 05:22:01 /* the whole time range */ 2022-04-28 05:22:16,828 DEBUG quick_setup about to run adcpsect as_nav.tmp 2022-04-28 05:22:16,872 INFO quick_run ... ran adcpsect for navsteps 2022-04-28 05:22:16,872 INFO quick_adcp ------------------------- 2022-04-28 05:22:16,872 INFO quick_adcp step 11: nav steps: run refabs 2022-04-28 05:22:16,872 INFO quick_adcp navstep 2 2022-04-28 05:22:16,872 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,872 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:16,872 DEBUG quick_setup running python command "refabs" 2022-04-28 05:22:16,872 DEBUG quick_subs fix_file_type: simple reference_file: a_sh.nav fix_file: a_sh.agt output: a_sh.ref year_base= 2022 ensemble_length= 300 gap_tolerance= 10 2022-04-28 05:22:16,872 DEBUG quick_setup about to run refabs refabs.tmp 2022-04-28 05:22:16,900 INFO quick_run ... ran refabs for navsteps 2022-04-28 05:22:16,900 INFO quick_adcp ------------------------- 2022-04-28 05:22:16,900 INFO quick_adcp step 12: nav steps: run smoothr for plots 2022-04-28 05:22:16,900 INFO quick_adcp navstep 3 2022-04-28 05:22:16,900 DEBUG quick_setup nav/smoothr.tmp exists 2022-04-28 05:22:16,901 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:16,901 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:16,901 DEBUG quick_setup running python command "smoothr" 2022-04-28 05:22:16,901 DEBUG quick_subs reference_file: a_sh.nav refabs_output: a_sh.ref output: a_sh.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2022-04-28 05:22:16,901 DEBUG quick_setup about to run smoothr smoothr.tmp 2022-04-28 05:22:17,038 INFO quick_run ... ran smoothr 2022-04-28 05:22:17,039 INFO quick_adcp ------------------------- 2022-04-28 05:22:17,039 INFO quick_adcp step 13: nav steps: smooth navigation for velocities 2022-04-28 05:22:17,039 INFO quick_adcp navstep 4 2022-04-28 05:22:17,039 INFO quick_run smoothing method for ship speed: refsm 2022-04-28 05:22:17,039 INFO quick_run smoothing window: 3 2022-04-28 05:22:17,039 INFO quick_run ship speed source: nav 2022-04-28 05:22:17,039 DEBUG quick_npy Starting: refsm 2022-04-28 05:22:17,292 DEBUG quick_npy Ending: refsm 2022-04-28 05:22:17,292 INFO quick_run ... shipspeed smoothing step done 2022-04-28 05:22:17,292 INFO quick_adcp ------------------------- 2022-04-28 05:22:17,292 INFO quick_adcp step 14: nav steps: put positions and uvship from refsm into codasdb 2022-04-28 05:22:17,292 INFO quick_adcp navstep 5 2022-04-28 05:22:17,292 DEBUG quick_setup nav/put_txy.tmp exists 2022-04-28 05:22:17,292 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:17,292 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:17,292 DEBUG quick_setup running python command "put_txy" 2022-04-28 05:22:17,292 DEBUG quick_subs dbname: ../adcpdb/a_sh position_file: a_sh.agt year_base= 2022 tolerance= 5 2022-04-28 05:22:17,292 DEBUG quick_setup about to run put_txy put_txy.tmp 2022-04-28 05:22:17,321 INFO quick_run ... ran put_txy 2022-04-28 05:22:17,321 DEBUG quick_setup nav/put_tuv.tmp exists 2022-04-28 05:22:17,321 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:17,321 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:17,321 DEBUG quick_setup running python command "put_tuv" 2022-04-28 05:22:17,321 DEBUG quick_subs dbname: ../adcpdb/a_sh shipspeed_file: refsm_tuv.asc year_base= 2022 tolerance= 5 2022-04-28 05:22:17,322 DEBUG quick_setup about to run put_tuv put_tuv.tmp 2022-04-28 05:22:17,350 INFO quick_run ... ran put_tuv 2022-04-28 05:22:17,350 DEBUG quick_mpl Starting plot: nav 2022-04-28 05:22:17,550 DEBUG quick_mpl closing 1 2022-04-28 05:22:17,550 DEBUG quick_mpl Ending plot: nav 2022-04-28 05:22:17,550 INFO quick_run ... made navigation plot 2022-04-28 05:22:17,550 INFO quick_adcp ------------------------- 2022-04-28 05:22:17,550 INFO quick_adcp step 15: nav steps: make reflayer plots 2022-04-28 05:22:17,550 INFO quick_adcp navstep 6 2022-04-28 05:22:17,550 DEBUG quick_mpl Starting plot: refl 2022-04-28 05:22:17,701 DEBUG quick_mpl found 21.401292 days of data 2022-04-28 05:22:17,701 DEBUG quick_mpl start day is 95.000000 2022-04-28 05:22:17,701 DEBUG quick_mpl figures with 2.000000 days per page 2022-04-28 05:22:17,701 DEBUG quick_mpl printing 12 pages 2022-04-28 05:22:17,701 DEBUG quick_mpl yrange will be [1.000000, 1.000000] 2022-04-28 05:22:17,919 DEBUG quick_mpl closing 1 2022-04-28 05:22:18,091 DEBUG quick_mpl closing 1 2022-04-28 05:22:18,091 DEBUG quick_mpl Ending plot: refl 2022-04-28 05:22:18,091 INFO quick_run ... made reflayer plots 2022-04-28 05:22:18,091 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:18,091 INFO quick_adcp step 10: run calibration steps 2022-04-28 05:22:18,091 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2022-04-28 05:22:18,091 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,091 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/cal/botmtrk 2022-04-28 05:22:18,091 DEBUG quick_setup running python command "lst_btrk" 2022-04-28 05:22:18,091 DEBUG quick_subs dbname: ../../adcpdb/a_sh output: a_sh.btm step_size= 1 year_base= 2022 time_ranges: 2022/04/06 19:39:12 to 2022/04/28 05:22:01 /* whole time range */ 2022-04-28 05:22:18,091 DEBUG quick_setup about to run lst_btrk lst_btrk.tmp 2022-04-28 05:22:18,105 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2022-04-28 05:22:18,105 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,105 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/cal/botmtrk 2022-04-28 05:22:18,106 DEBUG quick_setup running python command "refabsbt" 2022-04-28 05:22:18,106 DEBUG quick_subs fix_file_type: simple reference_file: a_sh.btm fix_file: ../../nav/a_sh.agt output: a_sh.ref year_base= 2022 ensemble_length= 300 gap_tolerance= 60 2022-04-28 05:22:18,106 DEBUG quick_setup about to run refabsbt refabsbt.tmp 2022-04-28 05:22:18,110 INFO quick_run ...bottom track info in check cal/botmtrk 2022-04-28 05:22:18,110 DEBUG quick_mpl Starting plot: btcal 2022-04-28 05:22:18,111 DEBUG quick_mpl No data in a_sh.btm 2022-04-28 05:22:18,111 DEBUG quick_mpl Returning from Btplot with no output 2022-04-28 05:22:18,111 DEBUG quick_mpl Ending plot: btcal 2022-04-28 05:22:18,111 DEBUG quick_setup nav/as_nav.tmp exists 2022-04-28 05:22:18,111 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,111 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/nav 2022-04-28 05:22:18,111 DEBUG quick_setup running python command "as_nav" 2022-04-28 05:22:18,111 DEBUG quick_subs dbname: ../adcpdb/a_sh output: a_sh step_size: 1 ndepth: 20 time_ranges: separate year_base= 2022 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2022/04/06 19:39:12 to 2022/04/28 05:22:01 /* the whole time range */ 2022-04-28 05:22:18,111 DEBUG quick_setup about to run adcpsect as_nav.tmp 2022-04-28 05:22:18,157 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2022-04-28 05:22:18,157 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,157 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/cal/watertrk 2022-04-28 05:22:18,157 DEBUG quick_setup running python command "timslip" 2022-04-28 05:22:18,157 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_sh.agt reference_file: ../../nav/a_sh.nav output_file: a_sh_7.cal year_base= 2022 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2022-04-28 05:22:18,157 DEBUG quick_setup about to run timslip timslip.tmp 2022-04-28 05:22:18,173 INFO quick_run ... watertrack info in cal/watertrk 2022-04-28 05:22:18,173 DEBUG quick_mpl Starting plot: wtcal 2022-04-28 05:22:18,177 DEBUG quick_mpl Found 211 calibration points 2022-04-28 05:22:18,377 DEBUG quick_mpl closing 1 2022-04-28 05:22:18,580 DEBUG quick_mpl closing 1 2022-04-28 05:22:18,580 DEBUG quick_mpl Ending plot: wtcal 2022-04-28 05:22:18,580 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,580 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/cal/watertrk 2022-04-28 05:22:18,580 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2022-04-28 05:22:18,580 DEBUG quick_npy Starting: guess_xducerxy 2022-04-28 05:22:18,734 DEBUG quick_npy Ending: guess_xducerxy 2022-04-28 05:22:18,734 INFO quick_run ... check cal/watertrk for estimate 2022-04-28 05:22:18,734 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:18,734 INFO quick_adcp step 11: extract and plot temperature 2022-04-28 05:22:18,734 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,734 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/edit 2022-04-28 05:22:18,734 DEBUG quick_setup running python command "lst_temp" 2022-04-28 05:22:18,734 DEBUG quick_subs dbname: ../adcpdb/a_sh output: a_sh.tem step_size= 1 year_base= 2022 time_ranges: all 2022-04-28 05:22:18,735 DEBUG quick_setup about to run lst_temp lst_temp.tmp 2022-04-28 05:22:18,763 DEBUG quick_mpl Starting plot: temp 2022-04-28 05:22:18,843 DEBUG quick_mpl plotting 5852 points 2022-04-28 05:22:18,952 DEBUG quick_mpl closing 1 2022-04-28 05:22:18,952 DEBUG quick_mpl Ending plot: temp 2022-04-28 05:22:18,952 INFO quick_run plotted temperature 2022-04-28 05:22:18,952 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:18,952 INFO quick_adcp step 12: extract and plot number of pings per ensemble 2022-04-28 05:22:18,952 DEBUG quick_setup edit/lst_npings.tmp exists 2022-04-28 05:22:18,952 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:18,952 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/edit 2022-04-28 05:22:18,952 DEBUG quick_setup running python command "lst_npings" 2022-04-28 05:22:18,952 DEBUG quick_subs dbname: ../adcpdb/a_sh output: a_sh_npings.txt step_size= 1 year_base= 2022 time_ranges: all 2022-04-28 05:22:18,952 DEBUG quick_setup about to run lst_npings lst_npings.tmp 2022-04-28 05:22:18,978 DEBUG quick_mpl Starting plot: npings 2022-04-28 05:22:19,017 DEBUG quick_mpl plotting 5852 points 2022-04-28 05:22:19,098 DEBUG quick_mpl closing 1 2022-04-28 05:22:19,098 DEBUG quick_mpl Ending plot: npings 2022-04-28 05:22:19,098 INFO quick_run ... plotted number of pings per ensemble 2022-04-28 05:22:19,098 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:19,098 INFO quick_adcp step 13: extract matlab "allbins" 2022-04-28 05:22:19,098 DEBUG quick_asect step 18: make matlab files for plotting 2022-04-28 05:22:19,098 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:19,098 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/vector 2022-04-28 05:22:19,098 DEBUG quick_setup running python command "timegrid" 2022-04-28 05:22:19,098 DEBUG quick_setup about to run timegrid a_sh.tmp 2022-04-28 05:22:19,104 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:19,104 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/vector 2022-04-28 05:22:19,104 DEBUG quick_setup running python command "as_vect" 2022-04-28 05:22:19,104 DEBUG quick_setup about to run adcpsect as_vect.tmp 2022-04-28 05:22:19,174 DEBUG quick_asect done making vector matfiles 2022-04-28 05:22:19,175 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:19,175 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/contour 2022-04-28 05:22:19,175 DEBUG quick_setup running python command "timegrid" 2022-04-28 05:22:19,175 DEBUG quick_setup about to run timegrid a_sh.tmp 2022-04-28 05:22:19,182 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:19,182 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/contour 2022-04-28 05:22:19,182 DEBUG quick_setup running python command "as_cont" 2022-04-28 05:22:19,182 DEBUG quick_setup about to run adcpsect as_cont.tmp 2022-04-28 05:22:19,316 DEBUG quick_setup starting in /home/data/SH2204_CalCOFI/proc/os75nb 2022-04-28 05:22:19,316 DEBUG quick_setup executing commands from /home/data/SH2204_CalCOFI/proc/os75nb/contour 2022-04-28 05:22:19,317 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_sh 2022-04-28 05:22:19,541 DEBUG quick_asect done running getmat with "allbins" 2022-04-28 05:22:19,541 INFO quick_adcp --------------------------------------------- 2022-04-28 05:22:19,541 INFO quick_adcp writing "cruise_info.txt" 2022-04-28 05:22:19,650 INFO run_quick copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2022-04-28 05:22:19,650 INFO run_quick copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2022-04-28 05:22:19,650 DEBUG run_quick matfile is contour/contour_uv.mat 2022-04-28 05:22:19,652 INFO run_quick copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2022-04-28 05:22:19,652 DEBUG run_quick matfile is vector/vector_uv.mat 2022-04-28 05:22:19,653 INFO run_quick copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2022-04-28 05:22:19,653 DEBUG run_quick matfile is contour/contour_xy.mat 2022-04-28 05:22:19,653 INFO run_quick copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2022-04-28 05:22:19,653 DEBUG run_quick matfile is vector/vector_xy.mat 2022-04-28 05:22:19,653 INFO run_quick copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2022-04-28 05:22:19,653 DEBUG run_quick about to copy file edit/a_sh.tem to /home/adcp/www/data/os75nb_temp.asc 2022-04-28 05:22:19,654 INFO run_quick copying edit/a_sh.tem to /home/adcp/www/data/os75nb_temp.asc 2022-04-28 05:22:20,247 DEBUG run_quick about to copy netcdf file /home/data/SH2204_CalCOFI/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2022-04-28 05:22:20,255 INFO run_quick copying /home/data/SH2204_CalCOFI/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2022-04-28 05:22:20,255 INFO run_quick nc_compressed: ddstep is 1 2022-04-28 05:22:20,326 INFO run_quick success: made compressed nc file /home/adcp/uhdas_tmp/os75nb_compr.nc 2022-04-28 05:22:20,368 INFO run_quick generating pingstats for os75nb 2022-04-28 05:22:20,368 INFO run_quick Ending quick_adcp.py