2023-11-19 15:06:45,023 INFO quick_setup fix file is a_sr.gps 2023-11-19 15:06:45,023 INFO quick_setup reflayer: ref_method = refsm 2023-11-19 15:06:45,023 INFO quick_setup reflayer: refuv_source = nav 2023-11-19 15:06:45,023 INFO quick_setup reflayer: refuv_smoothwin = 3 2023-11-19 15:06:45,023 INFO quick_adcp ===================================================== 2023-11-19 15:06:45,023 INFO quick_adcp ===================================================== 2023-11-19 15:06:45,023 INFO quick_adcp command line was: /usr/local/bin/run_quick.py -d os38nb 2023-11-19 15:06:45,023 INFO quick_adcp cwd is /mnt/md0/data/SR2325/proc/os38nb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2023-11-19 15:06:45,037 INFO quick_setup found 176 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/SR2325/raw/os38/*.raw" 2023-11-19 15:06:45,037 INFO quick_setup presently in scan, writing filelist to /mnt/md0/data/SR2325/proc/os38nb/ping/datafile_list.txt 2023-11-19 15:06:45,038 INFO quick_setup found 176 raw data files 2023-11-19 15:06:45,038 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,038 INFO quick_adcp step 1: set up files in "edit" directory 2023-11-19 15:06:45,038 INFO quick_run file exists (edit/clearflags.tmp). not writing 2023-11-19 15:06:45,038 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,038 INFO quick_adcp step 2: scan files for time range 2023-11-19 15:06:45,173 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,173 INFO quick_adcp step 3: generate averaged data... 2023-11-19 15:06:45,173 INFO quick_run file load/ping_editparams.txt exists. not replacing 2023-11-19 15:06:45,235 INFO pingavg ---------------- 2023-11-19 15:06:45,235 INFO pingavg sonar is os38nb 2023-11-19 15:06:45,235 INFO pingavg Pingavg.run for time range 322.583364 to 322.629542 2023-11-19 15:06:45,235 INFO pingavg transducer offset: xducer_dx = -2.000, xducer_dy = 10.000 2023-11-19 15:06:45,235 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2023-11-19 15:06:45,235 INFO pingavg ---------------- 2023-11-19 15:06:45,238 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,238 INFO quick_adcp step 4: load averaged data (to database) 2023-11-19 15:06:45,245 INFO quick_run loaded time range: 2023/11/18 14:41:18 to 2023/11/19 15:06:17 2023-11-19 15:06:45,270 INFO quick_run 15 block files present 2023-11-19 15:06:45,275 INFO quick_adcp database time range: 2023-11-19 15:06:45,275 INFO quick_adcp 2023/11/05 01:41:20 to 2023/11/19 15:06:17 2023-11-19 15:06:45,275 INFO quick_adcp (308.070370 to 322.629363) 2023-11-19 15:06:45,291 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,291 INFO quick_adcp step 5: set up files for codas editing (gautoedit.py) 2023-11-19 15:06:45,291 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,291 INFO quick_adcp step 6: run setflags? 2023-11-19 15:06:45,324 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,324 INFO quick_adcp step 7: get navigation 2023-11-19 15:06:45,326 INFO quick_subs navigation file nav/a_sr.gps created from load/*.gps2 2023-11-19 15:06:45,327 INFO quick_subs navigation file nav/a_sr.agt created from load/*.gpst2 2023-11-19 15:06:45,591 INFO quick_run plotted uvship 2023-11-19 15:06:45,591 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:45,591 INFO quick_adcp step 8: list heading 2023-11-19 15:06:45,612 INFO quick_run ... headings extracted 2023-11-19 15:06:45,612 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,612 INFO quick_adcp ---- running navsteps --- 2023-11-19 15:06:45,612 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,612 INFO quick_adcp step 9: nav steps: run adcpsect 2023-11-19 15:06:45,612 INFO quick_adcp navstep 1 2023-11-19 15:06:45,653 INFO quick_run ... ran adcpsect for navsteps 2023-11-19 15:06:45,653 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,653 INFO quick_adcp step 10: nav steps: run refabs 2023-11-19 15:06:45,653 INFO quick_adcp navstep 2 2023-11-19 15:06:45,673 INFO quick_run ... ran refabs for navsteps 2023-11-19 15:06:45,673 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,673 INFO quick_adcp step 11: nav steps: run smoothr for plots 2023-11-19 15:06:45,674 INFO quick_adcp navstep 3 2023-11-19 15:06:45,783 INFO quick_run ... ran smoothr 2023-11-19 15:06:45,783 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,783 INFO quick_adcp step 12: nav steps: smooth navigation for velocities 2023-11-19 15:06:45,783 INFO quick_adcp navstep 4 2023-11-19 15:06:45,783 INFO quick_run smoothing method for ship speed: refsm 2023-11-19 15:06:45,783 INFO quick_run smoothing window: 3 2023-11-19 15:06:45,783 INFO quick_run ship speed source: nav 2023-11-19 15:06:45,987 INFO quick_run ... shipspeed smoothing step done 2023-11-19 15:06:45,987 INFO quick_adcp ------------------------- 2023-11-19 15:06:45,987 INFO quick_adcp step 13: nav steps: put positions and uvship from refsm into codasdb 2023-11-19 15:06:45,987 INFO quick_adcp navstep 5 2023-11-19 15:06:46,014 INFO quick_run ... ran put_txy 2023-11-19 15:06:46,040 INFO quick_run ... ran put_tuv 2023-11-19 15:06:46,196 INFO quick_run ... made navigation plot 2023-11-19 15:06:46,196 INFO quick_adcp ------------------------- 2023-11-19 15:06:46,196 INFO quick_adcp step 14: nav steps: make reflayer plots 2023-11-19 15:06:46,196 INFO quick_adcp navstep 6 2023-11-19 15:06:46,570 INFO quick_run ... made reflayer plots 2023-11-19 15:06:46,570 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:46,570 INFO quick_adcp step 9: run calibration steps 2023-11-19 15:06:46,587 INFO quick_run ...bottom track info in check cal/botmtrk 2023-11-19 15:06:46,640 INFO quick_run ... watertrack info in cal/watertrk 2023-11-19 15:06:47,123 INFO quick_run ... check cal/watertrk for estimate 2023-11-19 15:06:47,124 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:47,124 INFO quick_adcp step 10: extract and plot temperature 2023-11-19 15:06:47,318 INFO quick_run plotted temperature 2023-11-19 15:06:47,318 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:47,318 INFO quick_adcp step 11: extract and plot number of pings per ensemble 2023-11-19 15:06:47,419 INFO quick_run ... plotted number of pings per ensemble 2023-11-19 15:06:47,419 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:47,419 INFO quick_adcp step 12: extract matlab "allbins" 2023-11-19 15:06:48,473 INFO quick_adcp --------------------------------------------- 2023-11-19 15:06:48,474 INFO quick_adcp writing "cruise_info.txt" 2023-11-19 15:06:48,478 INFO run_quick copying NOFIG to /home/adcp/www/figures/os38nb_hcorr_plot.png 2023-11-19 15:06:48,478 INFO run_quick copying NOFIG to /home/adcp/www/figures/thumbnails/os38nb_hcorr_plot_thumb.png 2023-11-19 15:06:48,480 INFO run_quick copying contour/contour_uv.mat to /home/adcp/www/data/os38nb_cont_uv.mat 2023-11-19 15:06:48,480 INFO run_quick copying vector/vector_uv.mat to /home/adcp/www/data/os38nb_vect_uv.mat 2023-11-19 15:06:48,481 INFO run_quick copying contour/contour_xy.mat to /home/adcp/www/data/os38nb_cont_xy.mat 2023-11-19 15:06:48,484 INFO run_quick copying vector/vector_xy.mat to /home/adcp/www/data/os38nb_vect_xy.mat 2023-11-19 15:06:48,485 INFO run_quick copying edit/a_sr.tem to /home/adcp/www/data/os38nb_temp.asc 2023-11-19 15:06:48,895 INFO run_quick copying /home/data/SR2325/proc/os38nb/contour/os38nb.nc to /home/adcp/www/data/os38nb.nc 2023-11-19 15:06:48,895 INFO run_quick nc_compressed: ddstep is 1 2023-11-19 15:06:48,965 INFO run_quick success: made compressed nc file /home/adcp/uhdas_tmp/os38nb_compr.nc 2023-11-19 15:06:49,004 INFO run_quick generating pingstats for os38nb 2023-11-19 15:06:49,004 INFO run_quick Ending quick_adcp.py