2025-04-01 06:42:42,623 INFO quick_setup fix file is a_sh.gps 2025-04-01 06:42:42,623 INFO quick_setup reflayer: ref_method = refsm 2025-04-01 06:42:42,623 INFO quick_setup reflayer: refuv_source = nav 2025-04-01 06:42:42,623 INFO quick_setup reflayer: refuv_smoothwin = 3 2025-04-01 06:42:42,623 INFO quick_adcp ===================================================== 2025-04-01 06:42:42,623 INFO quick_adcp ===================================================== 2025-04-01 06:42:42,623 INFO quick_adcp command line was: /usr/local/bin/run_quick.py -d os75nb 2025-04-01 06:42:42,623 INFO quick_adcp cwd is /home/data/SH-25-03_CalCOFI_Leg1/proc/os75nb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - netcdf - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2025-04-01 06:42:42,628 INFO quick_setup found 135 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/SH-25-03_CalCOFI_Leg1/raw/os75/*.raw" 2025-04-01 06:42:42,628 INFO quick_setup presently in scan, writing filelist to /home/data/SH-25-03_CalCOFI_Leg1/proc/os75nb/ping/datafile_list.txt 2025-04-01 06:42:42,628 INFO quick_setup found 135 raw data files 2025-04-01 06:42:42,629 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,629 INFO quick_adcp step 1: set up files in "edit" directory 2025-04-01 06:42:42,629 INFO quick_run file exists (edit/clearflags.tmp). not writing 2025-04-01 06:42:42,629 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,629 INFO quick_adcp step 2: scan files for time range 2025-04-01 06:42:42,691 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,691 INFO quick_adcp step 3: generate averaged data... 2025-04-01 06:42:42,691 INFO quick_run file load/ping_editparams.txt exists. not replacing 2025-04-01 06:42:42,723 INFO pingavg ---------------- 2025-04-01 06:42:42,723 INFO pingavg sonar is os75nb 2025-04-01 06:42:42,723 INFO pingavg Pingavg.run for time range 89.833349 to 89.878909 2025-04-01 06:42:42,723 INFO pingavg transducer offset: xducer_dx = -3.000, xducer_dy = 4.000 2025-04-01 06:42:42,723 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2025-04-01 06:42:42,723 INFO pingavg ---------------- 2025-04-01 06:42:42,725 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,725 INFO quick_adcp step 4: load averaged data (to database) 2025-04-01 06:42:42,747 INFO quick_run loaded time range: 2025/03/31 02:28:06 to 2025/03/31 21:03:05 2025-04-01 06:42:42,757 INFO quick_run 12 block files present 2025-04-01 06:42:42,759 INFO quick_adcp database time range: 2025-04-01 06:42:42,759 INFO quick_adcp 2025/03/20 16:28:05 to 2025/03/31 21:03:05 2025-04-01 06:42:42,759 INFO quick_adcp (78.686169 to 89.877141) 2025-04-01 06:42:42,763 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,763 INFO quick_adcp step 5: set up files for codas editing (gautoedit.py) 2025-04-01 06:42:42,763 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,763 INFO quick_adcp step 6: run setflags? 2025-04-01 06:42:42,774 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,774 INFO quick_adcp step 7: get navigation 2025-04-01 06:42:42,774 INFO quick_subs navigation file nav/a_sh.gps created from load/*.gps2 2025-04-01 06:42:42,775 INFO quick_subs navigation file nav/a_sh.agt created from load/*.gpst2 2025-04-01 06:42:42,927 INFO quick_run plotted uvship 2025-04-01 06:42:42,927 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,927 INFO quick_adcp step 8: list heading 2025-04-01 06:42:42,933 INFO quick_run ... headings extracted 2025-04-01 06:42:42,933 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:42,933 INFO quick_adcp step 9: plot heading correction 2025-04-01 06:42:43,148 INFO quick_run plots are in cal/rotate/*png 2025-04-01 06:42:43,148 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,148 INFO quick_adcp ---- running navsteps --- 2025-04-01 06:42:43,148 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,148 INFO quick_adcp step 10: nav steps: run adcpsect 2025-04-01 06:42:43,148 INFO quick_adcp navstep 1 2025-04-01 06:42:43,161 INFO quick_run ... ran adcpsect for navsteps 2025-04-01 06:42:43,161 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,161 INFO quick_adcp step 11: nav steps: run refabs 2025-04-01 06:42:43,161 INFO quick_adcp navstep 2 2025-04-01 06:42:43,169 INFO quick_run ... ran refabs for navsteps 2025-04-01 06:42:43,169 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,169 INFO quick_adcp step 12: nav steps: run smoothr for plots 2025-04-01 06:42:43,169 INFO quick_adcp navstep 3 2025-04-01 06:42:43,205 INFO quick_run ... ran smoothr 2025-04-01 06:42:43,205 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,205 INFO quick_adcp step 13: nav steps: smooth navigation for velocities 2025-04-01 06:42:43,205 INFO quick_adcp navstep 4 2025-04-01 06:42:43,205 INFO quick_run smoothing method for ship speed: refsm 2025-04-01 06:42:43,205 INFO quick_run smoothing window: 3 2025-04-01 06:42:43,205 INFO quick_run ship speed source: nav 2025-04-01 06:42:43,283 INFO quick_run ... shipspeed smoothing step done 2025-04-01 06:42:43,283 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,283 INFO quick_adcp step 14: nav steps: put positions and uvship from refsm into codasdb 2025-04-01 06:42:43,283 INFO quick_adcp navstep 5 2025-04-01 06:42:43,291 INFO quick_run ... ran put_txy 2025-04-01 06:42:43,298 INFO quick_run ... ran put_tuv 2025-04-01 06:42:43,377 INFO quick_run ... made navigation plot 2025-04-01 06:42:43,377 INFO quick_adcp ------------------------- 2025-04-01 06:42:43,377 INFO quick_adcp step 15: nav steps: make reflayer plots 2025-04-01 06:42:43,377 INFO quick_adcp navstep 6 2025-04-01 06:42:43,582 INFO quick_run ... made reflayer plots 2025-04-01 06:42:43,582 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:43,582 INFO quick_adcp step 10: run calibration steps 2025-04-01 06:42:43,587 INFO quick_run ...bottom track info in check cal/botmtrk 2025-04-01 06:42:43,604 INFO quick_run ... watertrack info in cal/watertrk 2025-04-01 06:42:43,890 INFO quick_run ... check cal/watertrk for estimate 2025-04-01 06:42:43,891 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:43,891 INFO quick_adcp step 11: extract and plot temperature 2025-04-01 06:42:43,962 INFO quick_run plotted temperature 2025-04-01 06:42:43,962 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:43,962 INFO quick_adcp step 12: extract and plot number of pings per ensemble 2025-04-01 06:42:44,011 INFO quick_run ... plotted number of pings per ensemble 2025-04-01 06:42:44,011 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:44,011 INFO quick_adcp step 13: extract matlab "allbins" 2025-04-01 06:42:44,156 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:44,156 INFO quick_adcp step 14: generate netcdf file 2025-04-01 06:42:44,407 INFO quick_adcp --------------------------------------------- 2025-04-01 06:42:44,407 INFO quick_adcp writing "cruise_info.txt" 2025-04-01 06:42:44,408 INFO run_quick copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2025-04-01 06:42:44,408 INFO run_quick copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2025-04-01 06:42:44,409 INFO run_quick copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2025-04-01 06:42:44,409 INFO run_quick copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2025-04-01 06:42:44,409 INFO run_quick copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2025-04-01 06:42:44,409 INFO run_quick copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2025-04-01 06:42:44,409 INFO run_quick copying edit/a_sh.tem to /home/adcp/www/data/os75nb_temp.asc 2025-04-01 06:42:44,578 INFO run_quick copying /home/data/SH-25-03_CalCOFI_Leg1/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2025-04-01 06:42:44,578 INFO run_quick nc_compressed: ddstep is 1 2025-04-01 06:42:44,611 INFO run_quick success: made compressed nc file /home/adcp/uhdas_tmp/os75nb_compr.nc 2025-04-01 06:42:44,625 INFO run_quick generating pingstats for os75nb 2025-04-01 06:42:44,625 INFO run_quick Ending quick_adcp.py