Peer-Reviewed Publications
These bibliographies are produced for annual CalCOFI performance reports (reporting dates: Apr 01 – Mar 31). Please notify calcofi@gmail.com of journal articles, reports, theses, or books that are not listed here that use CalCOFI data or mention/cite the CalCOFI program.
Journal Articles Using CalCOFI Data:
Alfken, S., L. Wörmer, J. S. Lipp, J. Wendt, A. Schimmelmann, and K. U. Hinrichs. 2020. Mechanistic Insights Into Molecular Proxies Through Comparison of Subannually Resolved Sedimentary Records With Instrumental Water Column Data in the Santa Barbara Basin, Southern California. Paleoceanography and Paleoclimatology 35:e2020PA004076.
Biard, T., and M. D. Ohman. 2020. Vertical niche definition of test-bearing protists (Rhizaria) into the twilight zone revealed by in situ imaging. Limnology and Oceanography 65:2583–2602.
Camps-Valls, G., D. H. Svendsen, J. Cortés-Andrés, Á. Moreno-Martínez, A. Pérez-Suay, J. Adsuara, I. Martín, M. Piles, J. Muñoz-Marí, and L. Martino. 2020. Living in the Physics and Machine Learning Interplay for Earth Observation.
Castillo-Ramírez, A., E. Santamaría-del-Ángel, A. González-Silvera, R. Frouin, M. T. Sebastiá-Frasquet, J. Tan, J. Lopez-Calderon, L. Sánchez-Velasco, and L. Enríquez-Paredes. 2020. A new algorithm to estimate diffuse attenuation coefficient from secchi disk depth. Journal of Marine Science and Engineering 8:558.
Cheresh, J., and J. Fiechter. 2020. Physical and Biogeochemical Drivers of Alongshore pH and Oxygen Variability in the California Current System. Geophysical Research Letters 47:e2020GL089553.
Choi, C. J., V. Jimenez, D. M. Needham, C. Poirier, C. Bachy, H. Alexander, S. Wilken, F. P. Chavez, S. Sudek, S. J. Giovannoni, and A. Z. Worden. 2020. Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans. Frontiers in Microbiology 11.
Evans, N., I. D. Schroeder, M. Pozo Buil, M. G. Jacox, and S. J. Bograd. 2020. Drivers of Subsurface Deoxygenation in the Southern California Current System. Geophysical Research Letters 47:1–9.
Evseenko, S. A., and Y. Y. Bolshakova. 2020. A description of late and transformation stages of larvae of the diaphus ostenfeldi in the western periphery of the south pacific gyre. Fishery Bulletin 118:319–323.
Fumo, J. T., M. L. Carter, R. E. Flick, L. L. Rasmussen, D. L. Rudnick, and S. F. Iacobellis. 2020. Contextualizing Marine Heatwaves in the Southern California Bight Under Anthropogenic Climate Change. Journal of Geophysical Research: Oceans 125:e2019JC015674.
Gallo, N. D., K. Hardy, N. C. Wegner, A. Nicoll, H. Yang, and L. A. Levin. 2020. Characterizing deepwater oxygen variability and seafloor community responses using a novel autonomous lander. Biogeosciences 17:3943–3960.
Gelß, P., S. Klus, I. Schuster, and C. Schütte. 2021. Feature space approximation for kernel-based supervised learning. Knowledge-Based Systems 221.
Guo, L., P. Xiu, F. Chai, and F. P. Chavez. 2020. Modeled Dynamics of Physical and Biological Processes in the Central California Current System From 1993 to 2016. Journal of Geophysical Research: Oceans 125.
Harvey, C. J., J. L. Fisher, J. F. Samhouri, G. D. Williams, T. B. Francis, K. C. Jacobson, Y. L. deReynier, M. E. Hunsicker, and N. Garfield. 2020. The importance of long-term ecological time series for integrated ecosystem assessment and ecosystem-based management. Progress in Oceanography 188:102418.
Hennige, S. J., U. Wolfram, L. Wickes, F. Murray, J. M. Roberts, N. A. Kamenos, S. Schofield, A. Groetsch, E. M. Spiesz, M. E. Aubin-Tam, and P. J. Etnoyer. 2020. Crumbling Reefs and Cold-Water Coral Habitat Loss in a Future Ocean: Evidence of “Coralporosis” as an Indicator of Habitat Integrity. Frontiers in Marine Science 7:668.
Howard, E. M., J. L. Penn, H. Frenzel, B. A. Seibel, D. Bianchi, L. Renault, F. Kessouri, M. A. Sutula, J. C. McWilliams, and C. Deutsch. 2020. Climate-driven aerobic habitat loss in the California Current System. Science Advances 6:eaay3188.
Kenitz, K. M., E. C. Orenstein, P. L. D. Roberts, P. J. S. Franks, J. S. Jaffe, M. L. Carter, and A. D. Barton. 2020. Environmental drivers of population variability in colony-forming marine diatoms. Limnology and Oceanography 65:2515–2528.
Kuriyama, P. T., G. Sugihara, A. R. Thompson, and B. X. Semmens. 2020. Identification of Shared Spatial Dynamics in Temperature, Salinity, and Ichthyoplankton Community Diversity in the California Current System With Empirical Dynamic Modeling. Frontiers in Marine Science 7:1–18.
Larkin, A. A., A. R. Moreno, A. J. Fagan, A. Fowlds, A. Ruiz, and A. C. Martiny. 2020. Persistent El Niño driven shifts in marine cyanobacteria populations. PLoS ONE 15:e0238405.
Lusquino Filho, L. A. D., L. F. R. Oliveira, A. L. Filho, G. P. Guarisa, L. M. Felix, P. M. V. Lima, and F. M. G. França. 2020. Extending the weightless WiSARD classifier for regression. Neurocomputing 416:280–291.
McCosker, E., C. H. Davies, and L. E. Beckley. 2020. Oceanographic influence on coastal zooplankton assemblages at three IMOS National Reference Stations in Western Australia. Marine and Freshwater Research 71:1672–1685.
Moos, S. B., E. A. Boyle, M. A. Altabet, and A. Bourbonnais. 2020. Investigating the cycling of chromium in the oxygen deficient waters of the Eastern Tropical North Pacific Ocean and the Santa Barbara Basin using stable isotopes. Marine Chemistry 221:103756.
Moreno-Alcántara, M., D. Delgado-Hofmann, and G. Aceves-Medina. 2020. Diversity of Atlantidae mollusks (Gastropoda: Pterotracheoidea) from the southern region of the California current off Baja California peninsula, Mexico. Marine Biodiversity 50:1–9.
Moscoso, J. E., A. L. Stewart, D. Bianchi, and J. C. Mcwilliams. 2021. The Meridionally Averaged Model of Eastern Boundary Upwelling Systems (MAMEBUSv1.0). Geoscientific Model Development 14:763–794.
Muhling, B. A., S. Brodie, J. A. Smith, D. Tommasi, C. F. Gaitan, E. L. Hazen, M. G. Jacox, T. D. Auth, and R. D. Brodeur. 2020. Predictability of Species Distributions Deteriorates Under Novel Environmental Conditions in the California Current System. Frontiers in Marine Science 7:589.
Nielsen, J. M., L. A. Rogers, R. D. Brodeur, A. R. Thompson, T. D. Auth, A. L. Deary, J. T. Duffy-Anderson, M. Galbraith, J. A. Koslow, and R. I. Perry. 2021. Responses of ichthyoplankton assemblages to the recent marine heatwave and previous climate fluctuations in several Northeast Pacific marine ecosystems. Global Change Biology 27:506–520.
Pitz, K. J., J. Guo, S. B. Johnson, T. L. Campbell, H. Zhang, R. C. Vrijenhoek, F. P. Chavez, and J. Geller. 2020. Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding. PLoS ONE 15:e0235159.
Priede, I. G., J. C. Drazen, D. M. Bailey, L. A. Kuhnz, and D. Fabian. 2020. Abyssal demersal fishes recorded at station M (34°50′N, 123° 00′W, 4100 m depth) in the northeast Pacific Ocean: An annotated check list and synthesis. Deep-Sea Research Part II: Topical Studies in Oceanography 173:104648.
Puentes-Salazar, A., P. Cervantes-Hernandez, and M. A. Gómez-Ponce. 2020. The seasonal entrance of Penaeus setiferus and Penaeus duorarum postlarvae into términos Lagoon, Campeche, México. Latin American Journal of Aquatic Research 48:237–246.
Ren, A. S., and D. L. Rudnick. 2021. Temperature and salinity extremes from 2014-2019 in the California Current System and its source waters. Communications Earth & Environment 2:1–9.
Salari, M., E. Teymouri, E. Salami, S. N. Sheibani, and M. Hosseinikheirabad. 2020. Dataset on the Assessments the Rate of Changing of Dissolved Oxygen and Temperature of Surface Water, Case Study: California, USA. Page Journal of Environmental Treatment Techniques.
Sun, K., T. Zhang, S. Chen, C. Xue, B. Zou, and L. Shi. 2020. Retrieval of Ultraviolet Diffuse Attenuation Coefficients From Ocean Color Using the Kernel Principal Components Analysis Over Ocean. IEEE Transactions on Geoscience and Remote Sensing 59:4579–4589.
Swalethorp, R., L. Aluwihare, A. R. Thompson, M. D. Ohman, and M. R. Landry. 2020. Errors associated with compound-specific δ15N analysis of amino acids in preserved fish samples purified by high-pressure liquid chromatography. Limnology and Oceanography: Methods 18:259–270.
Szesciorka, A. R., L. T. Ballance, A. Širović, A. Rice, M. D. Ohman, J. A. Hildebrand, and P. J. S. Franks. 2020. Timing is everything: Drivers of interannual variability in blue whale migration. Scientific Reports 10:1–9.
Takeshita, Y., B. D. Jones, K. S. Johnson, F. P. Chavez, D. L. Rudnick, M. Blum, K. Conner, S. Jensen, J. S. Long, T. Maughan, K. L. Mertz, J. T. Sherman, and J. K. Warren. 2021. Accurate ph and O2 measurements from spray underwater gliders. Journal of Atmospheric and Oceanic Technology 38:181–195.
Taylor-Burns, R., C. Cochran, K. Ferron, M. Harris, C. Thomas, A. Fredston, and B. E. Kendall. 2020. Locating gaps in the California Current System ocean acidification monitoring network. Science Progress 103:1–27.
Wang, S., S. A. Kranz, T. B. Kelly, H. Song, M. R. Stukel, and N. Cassar. 2020. Lagrangian Studies of Net Community Production: The Effect of Diel and Multiday Nonsteady State Factors and Vertical Fluxes on O2/Ar in a Dynamic Upwelling Region. Journal of Geophysical Research: Biogeosciences 125:e2019JG005569.
Wang, Y., Z. Lee, J. Wei, S. Shang, M. Wang, and W. Lai. 2021. Extending satellite ocean color remote sensing to the near-blue ultraviolet bands. Remote Sensing of Environment 253:112228.
Wei, X., K. Y. Li, T. Kilpatrick, M. Wang, and S. P. Xie. 2021. Large-Scale Conditions for the Record-Setting Southern California Marine Heatwave of August 2018. Geophysical Research Letters 48:e2020GL091803.
Zaba, K. D., P. J. S. Franks, and M. D. Ohman. 2021. The California Undercurrent as a Source of Upwelled Waters in a Coastal Filament. Journal of Geophysical Research: Oceans 126:e2020JC016602.
Zaba, K. D., D. L. Rudnick, B. D. Cornuelle, G. Gopalakrishnan, and M. R. Mazloff. 2020. Volume and heat budgets in the coastal California Current System: Means, annual cycles, and interannual anomalies of-014–16. Journal of Physical Oceanography 50:1435–1453.
Zamora-Garcia, O. G., J. F. Marquez-Farias, A. Stavrinaky-Suarez, C. Diaz-Avalos, N. I. Zamora-Garcia, and R. E. Lara-Mendoza. 2020. Catch rate, length, and sex ratio of Pacific hake (Merluccius productus) in the northern Gulf of California. Fishery Bulletin 118:365–380.
Journal Articles Mentioning CalCOFI/Citing CalCOFI Reports:
De Moor, C. L., C. D. Van Der Lingen, and D. S. Butterworth. 2021. The assumptions associated with the indices of South African anchovy abundance provided by the Daily Egg Production Method. University of Cape Town.
Félix-Ortiz, J. A., E. Alberto Aragón-Noriega, N. Castañeda-Lomas, G. Rodríguez-Domínguez, W. Valenzuela-Quiñónez, and S. Castillo-Vargasmachuca. 2020. Individual growth analysis of the pacific yellowlegs shrimp Penaeus californiensis via multi-criteria approach. Latin American Journal of Aquatic Research 48:768–778.
Kassi, J. B., G. Y. Koko, and B. A. Mobio. 2021. Contribution of remote sensing to the characterization of oceanic variables and their influences on the distribution of tunas in Ivorian waters from 2013 to 2018. International Journal of Fisheries and Aquatic Studies 9:403–413.
Kramer, S. J., K. M. Bisson, and A. D. Fischer. 2020. Observations of Phytoplankton Community Composition in the Santa Barbara Channel During the Thomas Fire. Journal of Geophysical Research: Oceans 125:e2020JC016851.
Rasmuson, L. K., and A. L. Shanks. 2020. Revisiting cross-shelf transport of Dungeness crab (Metacarcinus magister) megalopae by the internal tide using 16 years of daily abundance data. Journal of Experimental Marine Biology and Ecology 527:151334.
Trainer, V. L., R. M. Kudela, M. V. Hunter, N. G. Adams, and R. M. McCabe. 2020. Climate Extreme Seeds a New Domoic Acid Hotspot on the US West Coast. Frontiers in Climate 2:571836.
Books Mentioning or Citing CalCOFI:
Bahri, T., M. Vasconcellos, D. J. Welch, J. Johnson, R. I. Perry, X. Ma, and R. Sharma, editors. 2021. Adaptive management of fisheries in response to climate change: FAO. Page Adaptive management of fisheries in response to climate change.
Edwards, M. 2021. Sea life (pelagic ecosystems). Pages 409–425 Climate Change. Elsevier.
Morgado, F., and L. R. Vieira. 2020. Biodiversity and Biogeography of Zooplankton: Implications of Climate Change.
Oettli, P., C. Yuan, and I. Richter. 2021. The other coastal Niño/Niña—the Benguela, California, and Dakar Niños/Niñas. Pages 237–266 Tropical and Extratropical Air-Sea Interactions. Elsevier.
Sivasankari, M., and R. Anandan. 2020. Regression Analysis on Sea Surface Temperature. Pages 595–601 in S.-L. Peng, L. H. Son, G. Suseendran, and D. Balaganesh, editors. Intelligent Computing and Innovation on Data Science. Springer Singapore, Singapore.
Theses Mentioning or Citing CalCOFI:
Michaud, C. 2020, April. Effects of Phytoplankton Composition and Biominerals on the Episodic Pulses of Particulate Organic Carbon to Abyssal Depths. California State University, Monterey Bay.
Rivera, S. R. 2020. Microbial Ecology of the California Current Ecosystem. UC San Diego.
Reports Mentioning or Citing CalCOFI:
Engeman, L., E. Satterthwaite, A. Thompson, N. Gallo, N. Bowlin, and R. Goericke. 2020. Leveraging the legacy of the CalCOFI Monitoring Program: A summary for west coast fishery and ocean resource managers.
Lowry, M. S., K. A. Curtis, and C. M. Boerger. 2020. NOAA Technical Memorandum NMFS Measurements and regressions of otoliths, cephalopod beaks, and other prey hard parts used to reconstruct California Current predator diet composition.
Journal Articles Using CalCOFI Data:
Alfken, S., L. Wörmer, J. Wendt, J. S. Lipp, A. Schimmelmann, and K.-U. Hinrichs. 2019. A monthly-resolved 110-year biomarker record from Santa Barbara Basin: insights into drivers of proxy information. Page 29th International Meeting on Organic Geochemistry (IMOG). Gothenburg, Sweden.
Benway, H. M., L. Lorenzoni, A. E. White, B. Fiedler, N. M. Levine, D. P. Nicholson, M. D. DeGrandpre, H. M. Sosik, M. J. Church, T. D. O’Brien, M. Leinen, R. A. Weller, D. M. Karl, S. A. Henson, and R. M. Letelier. 2019. Ocean time series observations of changing marine ecosystems: an era of integration, synthesis, and societal applications. Frontiers in Marine Science.
Bograd, S. J., I. D. Schroeder, and M. G. Jacox. 2019. A water mass history of the Southern California current system. Geophysical Research Letters 46:6690–6698.
Denisse, S., and M. Eduardo. 2019. Ecological Zonation of Phytoplankton and Biomass Based on Bio-Optical Parameters off Baja California during Three Summer Seasons. Open Journal of Marine Science 9:121–136.
Deutsch, C., H. Frenzel, J. C. McWilliams, L. Renault, F. Kessouri, E. Howard, J.-H. Liang, D. Bianchi, and S. Yang. 2020. Biogeochemical variability in the California Current System. bioRxiv.
Dorval E., P. Appel, M. Human, B. Macewicz, W. W. 2019. Rearing and inducing spawning in captive Pacific sardine (Sardinops sagax). CalV 60:123–134.
Gallo, N. D., E. Drenkard, A. R. Thompson, E. D. Weber, D. Wilson-Vandenberg, S. McClatchie, J. A. Koslow, and B. X. Semmens. 2019. Bridging from monitoring to solutions-based thinking: lessons from CalCOFI for understanding and adapting to marine climate change impacts. Frontiers in Marine Science 6:1–21.
Gugliotti, E. F., M. E. DeLorenzo, and P. J. Etnoyer. 2019. Depth-dependent temperature variability in the Southern California bight with implications for the cold-water gorgonian octocoral Adelogorgia phyllosclera. Journal of Experimental Marine Biology and Ecology 514–515:118–126.
Howard, E. M., J. L. Penn, H. Frenzel, B. A. Seibel, D. Bianchi, L. Renault, F. Kessouri, M. A. Sutula, J. C. McWilliams, and C. Deutsch. 2020. Climate-driven aerobic habitat loss in the California Current System. Science Advances 6:1–11.
Kahru, M., R. Goericke, T. B. Kelly, and M. R. Stukel. 2020. Satellite estimation of carbon export by sinking particles in the California Current calibrated with sediment trap data. Deep-Sea Research Part II 173.
Lilly, L. E., U. Send, M. Lankhorst, T. R. Martz, R. A. Feely, A. J. Sutton, and M. D. Ohman. 2019. Biogeochemical anomalies at two southern California Current system moorings during the 2014–2016 warm anomaly-El Niño sequence. Journal of Geophysical Research: Oceans 124:6886–6903.
Mazloff, M. R., B. Cornuelle, S. T. Gille, and J. Wang. 2020. The Importance of Remote Forcing for Regional Modeling of Internal Waves. Journal of Geophysical Research: Oceans 125.
Miller, R. R., J. A. Santora, T. D. Auth, K. M. Sakuma, B. K. Wells, J. C. Field, and R. D. Brodeur. 2019. Distribution of pelagic Thaliaceans, Thetys vagina and Pyrosoma atlanticum, during a period of mass occurrence within the California Current. CalCOFI Report 60:94–108.
Moreno-Alcántara, M. 2019. Atlantidae (Pterotracheoidea) of the northeast Pacific. ZOOSYMPOSIA.
Muhling, B., S. Brodie, O. Snodgrass, D. Tommasi, H. Dewar, D. Tommas, J. Childers, M. Jacox, C. Edwards, Y. Xu, and S. Snyder. 2019. Dynamic habitat use of albacore and their primary prey species in the California Current system. CalCOFI Report 60:79–93.
Nevárez-Martínez, M. O., E. A. Arzola-Sotelo, J. López-Martínez, J. P. Santos-Molina, and M. D. L. Á. Martínez-Zavala. 2019. Modeling growth of the Pacific sardine Sardinops caeruleus in the Gulf of California, Mexico, using the multimodel inference approach. CalCOFI Report 60:66–78.
Nishimoto, M. M., L. Washburn, M. S. Love, D. M. Schroeder, B. M. Emery, and L. Kui. 2019. Timing of juvenile fish settlement at offshore oil platforms coincides with water mass advection into the Santa Barbara Channel, California. Bull Mar Sci 95:559–582.
Osborne, E. B., N. E. Umling, M. Bizimis, W. Buckley, A. Sadekov, E. Tappa, B. Marshall, L. R. Sautter, and R. C. Thunell. 2020a. A Sediment Trap Evaluation of B/Ca as a Carbonate System Proxy in Asymbiotic and Nondinoflagellate Hosting Planktonic Foraminifera. Paleoceanography and Paleoclimatology 35.
Osborne, E., R. Thunell, N. Gruber, R. Feely, and C. Benitez-Nelson. 2020b. Decadal variability in twentieth-century ocean acidification in the California Current Ecosystem. Nature Geoscience 13:43–49.
Renault, L., J. C. McWilliams, A. Jousse, C. Deutsch, H. Frenzel, F. Kessouri, and R. Chen. 2020. The Physical Structure and Behavior of the California Current System. bioRxiv.
Robinette, D. P., N. Nur, and J. Jahncke. 2019. Spatial patterns in nearshore juvenile fish abundance throughout the California network of marine protected areas as revealed by seabird foraging rates. CalCOFI Report 60:109–122.
Rykaczewski, R. 2019. Changes in mezozooplankton size structure along a trophic gradient in the California Current Ecosystem and implications for small pelagic fish. Marine Ecology Progress Series 617:165–182.
Salat, J., J. Pascual, M. Flexas, T. M. Chin, and J. Vazquez-Cuervo. 2019. Forty-five years of oceanographic and meteorological observations at a coastal station in the NW Mediterranean: a ground truth for satellite observations. Ocean Dynamics 69:1067–1084.
Schroeder, I. D., J. A. Santora, S. J. Bograd, E. L. Hazen, K. M. Sakuma, A. M. Moore, C. A. Edwards, B. K. Wells, and J. C. Field. 2019. Source water variability as a driver of rockfish recruitment in the California Current Ecosystem: implications for climate change and fisheries management. Canadian Journal of Fisheries and Aquatic Sciences 76:950–960.
Scott, J., S. Crooke, I. Cetinić, C. Del Castillo, and C. Gentemann. 2020. Correcting non-photochemical quenching of Saildrone chlorophyll-a fluorescence for evaluation of satellite ocean color retrievals. Optics Express 28:4274–4285.
Snyder, J. N., T. W. Bell, D. A. Siegel, N. J. Nidzieko, and K. C. Cavanaugh. 2020. Sea Surface Temperature Imagery Elucidates Spatiotemporal Nutrient Patterns for Offshore Kelp Aquaculture Siting in the Southern California Bight. Frontiers in Marine Science 7.
Stephens, B. M., S. D. Wankel, J. M. Beman, A. J. Rabines, A. E. Allen, and L. I. Aluwihare. 2020. Euphotic zone nitrification in the California Current ecosystem. Limnology and Oceanography 65:790–806.
Sydeman, W. J. 2020. Seabirds on the CalCOFI/CCE-LTER Survey, Winter 2020 Data Report.
Sydeman, W. J., S. Dedman, M. García-Reyes, S. A. Thompson, J. A. Thayer, A. Bakun, and A. D. MacCall. 2020. Sixty-five years of northern anchovy population studies in the southern California Current: A review and suggestion for sensible management. ICES Journal of Marine Science 77:486–499.
Thompson AR, Harvey CJ, Sydeman WJ, Barcelo C, Bograd SJ, Brodeur RD, Fiechter J, Field JC, Garfield N, Good TP, Hazen EL, Hunsicker ME, Jacox MG, Leising A, Lindsay J, Melin SR, Santora JA, Schroeder ID, Thayer JA, Wells BK, Williams GD 2019. Ecological indicators of the status and trends of the pelagic forage community in the California Current Large Marine Ecosystem, 1998-2016. Ecological Indicators 105: 215-228.
Tunnicliffe, V., R. Gasbarro, F. Juanes, J. Qualley, N. Soderberg, and J. W. F. Chu. 2020. An hypoxia-tolerant flatfish: consequences of sustained stress on the slender sole Lyopsetta exilis (Pleuronectidae) in the context of a changing ocean. Journal of Fish Biology 96:394–407.
Turley, B. D., and R. R. Rykaczewski. 2019. Influence of wind events on larval fish mortality rates in the southern California Current ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 76:2418–2432.
White, M. E., P. A. Rafter, B. M. Stephens, S. D. Wankel, and L. I. Aluwihare. 2019. Recent increases in water column denitrification in the seasonally suboxic bottom waters of the Santa Barbara Basin. Geophysical Research Letters 46:6786–6795.
Widyastuti, W., and J. Darmawan. 2019. Prediksi salinitas air laut dengan deep neural network. Jurnal Ilmiah Matrik 21:84–90.
Zwolinski, J. P., and D. A. Demer. 2019. Re-evaluation of the environmental dependence of Pacific sardine recruitment. Fisheries Research 216:120–125.
Journal Articles Mentioning CalCOFI/Citing CalCOFI Reports:
Akella, S., and C. Gentemann. 2019. Saildrone Baja Field Campaign: A Comparison of Surface Meteorology with GEOS Products.
Banas, N. S., H. T. T. Nguyen, S. Garnier, P. Maccready, and S. E. Allen. 2019. Climate impacts on patterns of phytoplankton production in Puget Sound, USA: A model synthesis and narrowing of hypotheses.
Cuevas, M., K. Górski, L. Castro, A. Vivancos, and M. Reid. 2019. Otolith elemental composition reveals separate spawning areas of anchoveta, Engraulis ringens, off central Chile and northern Patagonia. Scientia Marina 83:317–326.
Jacobson, K., R. Baldwin, M. Banks, and R. Emmett. 2019. Use of parasites to clarify residency and migration patterns of Pacific sardine (Sardinops sagax) in the California Current. Page Fishery Bulletin.
Morgado, F., and L. Vieira. 2020. Biodiversity and Biogeography of Zooplankton: Implications of Climate Change. Pages 53–86 in W. L. F. et Al., editor. Encyclopedia of the UN Sustainable Development Goals. Switzerland.
Palance, D. G., B. J. Macewicz, K. Stierhoff, D. A. Demer, and J. P. Zwolinski. 2019. Length conversions and mass–length relationships of five forage-fish species in the California current ecosystem. Journal of Fish Biology 95:1116–1124.
Zingone, A., D. D’alelio, M. G. Mazzocchi, M. Montresor, and D. Sarno. 2019. Time series and beyond: multifaceted plankton research at a marine Mediterranean LTER site. Nature Conservation 34:273–310.
Theses:
Thoman, T. X. 2018. Temporal and Spatial Variability of Oxygen Levels in Upwelled Waters Along the Southern California Coast. University of Maine.
Journal Articles:
Alfken, S., L. Wörmer, J. S. Lipp, J. Wendt, H. Taubner, A. Schimmelmann, and K. U. Hinrichs. 2019. Micrometer scale imaging of sedimentary climate archives – Sample preparation for combined elemental and lipid biomarker analysis. Organic Geochemistry 127:81–91.
Andrzejczyk, N., K. Sakamoto, J. Armstrong, and D. Schlenk. 2018. Examining the role of estrogenic activity and ocean temperature on declines of a coastal demersal flatfish population near the municipal wastewater outfall of Orange County, California, USA. Marine Pollution Bulletin 137:129–136.
Beaugrand, G., A. Conversi, A. Atkinson, J. Cloern, S. Chiba, S. Fonda-Umani, R. R. Kirby, C. H. Greene, E. Goberville, S. A. Otto, P. C. Reid, L. Stemmann, and M. Edwards. 2019. Prediction of unprecedented biological shifts in the global ocean. Nature Climate Change 9:237–243.
Becker, E. A., K. A. Forney, J. V. Redfern, J. Barlow, M. G. Jacox, J. J. Roberts, and D. M. Palacios. 2019. Predicting cetacean abundance and distribution in a changing climate. Diversity and Distributions 25:626–643.
Chao, Y., H. Zhang, Y. Chao, J. D. Farrara, K. J. Armenta, R. K. Walter, L. Centurioni, D. Rudnick, F. Chavez, and J. B. Girton. 2018. Development, implementation, and validation of a California coastal ocean modeling, data assimilation, and forecasting system. Deep-Sea Research Part II: Topical Studies in Oceanography 151:49–63.
Chereskin, T. K., C. B. Rocha, S. T. Gille, D. Menemenlis, and M. Passaro. 2019. Characterizing the transition from balanced to unbalanced motions in the southern California Current. Journal of Geophysical Research: Oceans 124:2088–2109.
Chu, P. C., T. Margolina, D. A. Rodriguez, C. Fan, and L. M. Ivanov. 2018. Spatial and temporal variability of the California Current identified from the synoptic monthly gridded World Ocean Database (WOD). Deep-Sea Research Part II: Topical Studies in Oceanography 151:37–48.
Doray, M., P. Petitgas, J. B. Romagnan, M. Huret, E. Duhamel, C. Dupuy, J. Spitz, M. Authier, F. Sanchez, L. Berger, G. Dorémus, P. Bourriau, P. Grellier, and J. Massé. 2018. The PELGAS survey: Ship-based integrated monitoring of the Bay of Biscay pelagic ecosystem. Progress in Oceanography 166:15–29.
Fitzgerald, S. P., J. R. Wilson, and H. S. Lenihan. 2018. Detecting a need for improved management in a data-limited crab fishery. Fisheries Research 208:133–144.
Gómez-Ocampo, E., G. Gaxiola-Castro, R. Durazo, and E. Beier. 2018. Effects of the 2013-2016 warm anomalies on the California Current phytoplankton. Deep-Sea Research Part II: Topical Studies in Oceanography 151:64–76.
Haskell, W. Z., and J. C. Fleming. 2018. Concurrent estimates of carbon export reveal physical biases in ΔO2/Ar-based net community production estimates in the Southern California Bight. Journal of Marine Systems 183:23–31.
Hogle, S. L., C. L. Dupont, B. M. Hopkinson, A. L. King, K. N. Buck, K. L. Roe, R. K. Stuart, A. E. Allen, E. L. Mann, Z. I. Johnson, and K. A. Barbeau. 2018. Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. Proceedings of the National Academy of Sciences of the United States of America 115:13300–13305.
Kilpatrick, T., S.-P. Xie, A. J. Miller, and N. Schneider. 2018. Satellite observations of enhanced chlorophyll variability in the Southern California Bight. Journal of Geophysical Research: Oceans 123:7550–7563.
Koslow, J. A., P. Davison, E. Ferrer, S. P. A. Jiménez Rosenberg, G. Aceves-Medina, and W. Watson. 2018. The evolving response of mesopelagic fishes to declining midwater oxygen concentrations in the southern and central California Current. ICES Journal of Marine Science:1–13.
Lee, K. H., H. J. Jeong, K. Lee, P. J. S. Franks, K. A. Seong, S. Y. Lee, M. J. Lee, S. Hyeon Jang, E. Potvin, A. Suk Lim, E. Y. Yoon, Y. Du Yoo, N. S. Kang, and K. Y. Kim. 2019. Effects of warming and eutrophication on coastal phytoplankton production. Harmful Algae 81:106–118.
Lilly, L. E., and M. D. Ohman. 2018. CCE IV: El Niño-related zooplankton variability in the southern California Current System. Deep-Sea Research Part I: Oceanographic Research Papers 140:36–51.
McLaughlin, K., N. P. Nezlin, S. B. Weisberg, A. G. Dickson, J. A. T. Booth, C. L. Cash, A. Feit, J. R. Gully, M. D. A. Howard, S. Johnson, A. Latker, M. J. Mengel, G. L. Robertson, A. Steele, and L. Terriquez. 2018. Seasonal patterns in aragonite saturation state on the southern California continental shelf. Continental Shelf Research 167:77–86.
Ohman, M. D. 2018. Introduction to collection of papers on the response of the southern California Current Ecosystem to the Warm Anomaly and El Niño, 2014–16. Deep-Sea Research Part I: Oceanographic Research Papers 140:1–3.
Peabody, C. E., A. R. Thompson, D. F. Sax, R. E. Morse, and C. T. Perretti. 2018. Decadal regime shifts in southern California’s ichthyoplankton assemblage. Marine Ecology Progress Series 607:71–83.
Phelan, P. J., J. Steinbeck, and R. K. Walter. 2018. Influence of internal bores on larval fish abundance and community composition. Regional Studies in Marine Science 20:1–12.
Vazquez-Cuervo, J., and J. Gomez-Valdes. 2018. SMAP and CalCOFI observe freshening during the 2014-2016 Northeast Pacific Warm Anomaly. Remote Sensing 10:1–16.
Weber, E. D., Y. Chao, and F. Chai. 2018. Performance of fish-habitat classifiers based on derived predictors from a coupled biophysical model. Journal of Marine Systems 186:105–114.
Books:
Chiappa-Carrara, X., C. Enríquez, V. Papiol, I. Mariño-Tapia, and C. Reyes-Hernández. 2019. Chapter 28 – Pacific Coast of Mexico. Pages 655–671 World Seas: an Environmental Evaluation (Second Edition). Second Edi. Elsevier Ltd.
Corredor, J. E. 2018. Coastal Ocean Observing: Platforms, Sensors and Systems. First edition. Springer International Publishing AG, Cham, Switzerland.
Goodwin, K. D., F. E. Muller-Karger, A. Djurhuus, L. Zeigler Allen, A. E. Allen, J. P. McCrow, and G. Canonico Hyde. 2019. Molecular Approaches for an Operational Marine Biodiversity Observation Network. Pages 613–631 in Charles Sheppard, editor. World Seas: an Environmental Evaluation (Second Edition). Second Edi. Elsevier Ltd.
Rozwadowski, H. M., and C. E. Countryman. 2019. History of Ocean Sciences. Pages 516–519 Encyclopedia of Ocean Sciences (Third Edition). Academic Press.
Theses:
Banez, T. 2019. Examining Shortfin Mako and Blue Shark Movements in Relation to the Southern California Bight Oxygen Minimum Zone. Scripps Institution of Oceanography.
McCormick, L. 2019. Oxygen dependence of visual physiology and behavior in marine invertebrate larvae and its ecological implications. UC San Diego.
Reports:
Thompson AR, Schroeder ID, Bograd SJ, Hazen EL, Jacox MG, Leising AL, Wells BK, Largier J, Fisher JL, Jacobson K, Zeman S, Bjorkstedt EP, Robertson RR, Kahru M, Goericke R, Peabody CE, Baumgartner TR, Lavaniegos BE, Miranda LE, Gomez-Ocampo E, Gomez-Valdes J, Ault TR, Daly EA, Morgan CA, Burke BJ, Field JC, Sakuma KM, Weber ED, Watson W, Porquez JM, Dolliver J, Lyons D, Orben RA, Zamon JE, Warzybok P, Jahncke J, Santora JA, Thompson SA, Hoover B, Sydeman W, Melin SR. 2019 State of the California Current: A new anchovy regime and Marine Heatwave? California Cooperative Oceanic Fisheries Investigations Reports, 60: 1-61.
Journal Articles:
Becker EA, Forney KA, Thayre BJ, Debich AJ, Campbell GS, et al. 2017. Habitat-Based Density Models for Three Cetacean Species off Southern California Illustrate Pronounced Seasonal Differences. Frontiers in Marine Science 4(121).
Bowlin, N. M., A. R. Thompson, J. P. Zwolinski, W. Watson and P. A. Hastings. In Press. Ontogenetic distribution and abundance of early life history stages of mesopelagic fishes off central California. Journal of Fish Biology.
Davison, P. C., W. J. Sydeman and J. A. Thayer. 2017. Are There Temporal or Spatial Gaps in Recent Estimates of Anchovy off California? California Cooperative Oceanic Fisheries Investigations Reports 58.
Javor, B. and E. Dorval. 2017. Composition and Interannual Variability in Trace Element Profiles of Pacific Sardine Otoliths. California Cooperative Oceanic Fisheries Investigations Reports 58.
Kahru, M., P. Alvarado-Graef, B. Martín-Atienza and R. Durazo. In Review. Time series of satellite-derived ocean chlorophyll, productivity and sea-surface temperature in the California Current. Ciencias Marinas.
Kahru, M., M. G. Jacox and M. D. Ohman. 2018. CCE1: Decrease in the frequency of oceanic fronts and surface chlorophyll concentration in the California Current System during the 2014-2016 northeast Pacific warm anomalies. Deep-Sea Research I.
Kelly, T. B., R. Goericke, M. Kahru, H. Song and M. R. Stukel. 2018. CCE1: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep-Sea Research I.
Kenitz, K.M., Visser, A.W., Ohman, M.D., Landry, M.R., and Andersen, K.H. 2019. Community trait distribution across environmental gradients. Ecosystems 22:968-980.
Koslow, J. A., H. McMonagle and W. Watson. 2017. Influence of climate on the biodiversity and community structure of fishes in the southern California Current. Marine Ecology Progress Series 571:193-206.
Lilly, L. E., and M. D. Ohman. 2018. CCE IV: El Niño-related zooplankton variability in the southern California Current System. Deep-Sea Research Part I: Oceanographic Research Papers 140:36–51.
McClatchie, S., I. L. Hendy, A. R. Thompson and W. Watson. 2017. Collapse and recovery of forage fish populations prior to commercial exploitation. Geophysical Research Letters 44(4):1877-1885.
Rosales-Casian, J. A. 2018. Biological Indicator of 2014–15 Warming Conditions: Presence of the Mexican Lookdown (Selene brevoortii), Pacific Tripletail (Lobotes pacificus) and Cortez Bonefish (Albula gilberti) in the Temperate Eastern Pacific of Mexico. California Cooperative Oceanic Fisheries Investigations Reports 58.
Thayer, J. A., A. D. Maccall, W. J. Sydeman and P. C. Davison. 2017. California Anchovy Population Remains Low, 2012–16. California Cooperative Oceanic Fisheries Investigations Reports 58.
Thompson, A. R., D. C. Chen, L. W. Guo, J. R. Hyde and W. Watson. 2017. Larval abundances of rockfishes that were historically targeted by fishing increased over 16 years in association with a large marine protected area. Royal Society Open Science 4(9).
Thompson, A. R., C. E. Lennert-Cody, S. McClatchie, E. D. Weber and W. Watson. 2017. Correcting for bias in ichthyoplankton abundance estimates associated with the transition from ring to bongo net sampling. California Cooperative Oceanic Fisheries Investigations Reports 58:113-123.
Thompson, A. R., I. D. Schroeder, S. J. Bograd, E. L. Hazen, M. G. Jacox, A. L. Leising, B. K. Wells, J. L. Largier, J. L. Fisher, K. Jacobson, S. Zeman, E. P. Bjorkstedt, R. R. Robertson, F. P. Chavez, M. Kahru, R. Georicke, M. S., C. E. Peabody, R. R. Baumgartner, B. E. Lavaniegos, J. Gomez-Valdez, R. D. Brodeur, E. A. Daly, C. A. Morgan, T. R. Auth, B. J. Burke, J. C. Field, K. Sakuma, E. D. Weber, W. Watson, J. Coates, R. Schoenbaum, L. Rogers-Bennett, R. M. Suryan, J. Dolliver, S. Loredo, J. E. Zamon, S. S.R., R. T. Golightly, P. Warzybok, J. Jahncke, J. A. Santora, S. A. Thompson, W. J. Sydeman, and S. R. Melin. 2018. State of the California Current 2017-18: Still not quite normal in the north and getting interesting in the south. CalCOFI Reports 59:1-66.
Thompson, S. A., W. J. Sydeman, J. A. Thayer, A. Weinstein, K. L. Krieger and D. Hay. 2017. Trends in the Pacific Herring (Clupea pallasii) Metapopulation in the California Current Ecosystem. California Cooperative Oceanic Fisheries Investigations Reports 58.
Valencia-gasti, J. A., E. D. Weber, T. Baumgartner, R. Durazo, C. E. Lennert-Cody and S. McClatchie. 2018. Spring Spawning Distribution of Pacific Sardine in US and Mexican Waters. California Cooperative Oceanic Fisheries Investigations Reports 50:79-85.
Weber, E. D., Y. Chao, and F. Chai. 2018. Performance of fish-habitat classifiers based on derived predictors from a coupled biophysical model. Journal of Marine Systems 186:105–114.
Wells, B. K., I. D. Schroeder, S. J. Bograd, E. L. Hazen, M. G. Jacox, A. Leising, N. Mantua, J. A. Santora, J. Fisher, W. T. Peterson, E. Bjorkstedt, R. R. Robertson, F. P. Chavez, R. Goericke, R. Kudela, C. Anderson, B. E. Lavaniegos, J. Gomez-Valdes, R. D. Brodeur, E. A. Daly, C. A. Morgan, T. D. Auth, J. C. Field, K. Sakuma, S. McClatchie, A. R. Thompson, E. D. Weber, W. Watson, R. M. Suryan, J. Parrish, J. Dolliver, S. Loredo, J. M. Porquez, J. E. Zamon, S. R. Schneider, R. T. Golightly, P. Warzybok, R. Bradley, J. Jahncke, W. J. Sydeman, S. R. Melin, J. A. Hildebrand, A. J. Debich and B. J. Thayre. 2017. State of the California Current 2016-2017: Still Anything but “Normal” in the North. California Cooperative Oceanic Fisheries Investigations Reports 58.
Theses:
Nickels, C., 2017. The co-location of blue whales and their euphausiid prey across multiple spatial scales, Ph.D thesis, University of California, San Diego, CA.
Becker EA, Forney KA, Thayre BJ, Debich AJ, Campbell GS, et al. 2017. Habitat-Based Density Models for Three Cetacean Species off Southern California Illustrate Pronounced Seasonal Differences. Frontiers in Marine Science.
Cavole L-CM, Demko AM, Diner RE, Giddings A, Koester I, et al. 2016. Biological Impacts of the 2013-2015 Warm-Water Anomaly in the Northeast Pacific. Oceanography 29: 273-85.
Chao Y, Farrara JD, Zhang H, Armenta KJ, Centurioni L, et al. 2017. Development, implementation, and validation of a California coastal ocean modeling, data assimilation, and forecasting system. Deep Sea Research Part II: Topical Studies in Oceanography.
Checkley Jr DM, Asch RG, Rykaczewski RR. 2017. Climate, Anchovy, and Sardine. Annual Review of Marine Science 9: 469-93.
Dakos V, Glaser SM, Hsieh CH, Sugihara G. 2017. Elevated nonlinearity as an indicator of shifts in the dynamics of populations under stress. Journal of The Royal Society Interface 14.
Davison PC, Sydeman WJ, Thayre BJ. 2017. Are there temporal or spatial gaps in recent estimates of anchovy off California? California Cooperative Oceanic Fisheries Investigations Reports 58.
Demer DA, Zwolinski JP. 2017. A Method to Consistently Approach the Target Total Fishing Fraction of Pacific Sardine and Other Internationally Exploited Fish Stocks. North American Journal of Fisheries Management 37: 284-93.
Everett JD, Baird M, Buchanan P, al. e. 2017. Modeling what we sample and sampling what we model: challenges for zooplankton model assessment. Frontiers in Marine Science 4.
Franklin MP, Chabot CL, Allen LG. 2016. A Baseline Investigation into the Population Structure of White Seabass, Atractoscion nobilis, in California and Mexican Waters Using Microsatellite DNA Analysis. Bulletin Southern California Academy of Sciences 115: 126-35.
García-Reyes M, Sydeman WJ. 2016. California Multivariate Ocean Climate Indicator (MOCI) and marine ecosystem dynamics. Ecological Indicators 72: 521-29.
Gómez-Ocampo E, Gaxiola-Castro G, Durazo R, Beier E. 2017. Effects of the 2013-2016 warm anomalies on the California Current phytoplankton. Deep Sea Research Part II: Topical Studies in Oceanography.
Hodgson EE, Essington TE, Kaplan IC. 2016. Extending Vulnerability Assessment to Include Life Stages Considerations. PloS One 11: 1-22.
Jacox MG, Hazen EL, Bograd SJ. 2016. Optimal Environmental Conditions and Anomalous Ecosystem Responses: Constraining Bottom-up Controls of Phytoplankton Biomass in the California Current System. Scientific Reports 6: 27612.
Jacox MG, Hazen EL, Zaba KD, Rudnick DL, Edwards CA, et al. 2016. Impacts of the 2015–2016 El Niño on the California Current System: Early assessment and comparison to past events. Geophysical Research Letters 43: 7072-80.
Javor BJ, Dorval E. 2016. Stability of trace elements in otoliths of juvenile Pacific sardine Sardinops sagax. California Cooperative Oceanic Fisheries Investigations Reports 57: 109-23.
Jones WA, Checkley DM. 2017. Classification of otoliths of fishes common in the Santa Barbara Basin based on morphology and chemical composition. Canadian Journal of Fisheries and Aquatic Sciences: 1-13.
Kaplan IC, Koehn LE, Hodgson EE, Marshall KN, Essington TE. 2017, In Press. Modeling food web effects of low sardine and anchovy abundance in the California Current. Ecological Modelling.
Koslow JA, McMonagle H, Watson W. 2017. Influence of climate on the biodiversity and community structure of fishes in the southern California Current. Marine Ecology Progress Series 571: 193-206.
Kurle CM, McWhorter JK. 2017. Spatial and temporal variability within marine isoscapes: implications for interpreting stable isotope data from marine systems. Marine Ecology Progress Series 568: 31-45.
Lavaniegos BE. 2016. Changes in composition of summer hyperiid amphipods from a subtropical region of the California current during 2002–2008. Journal of Marine Systems 165: 13-26.
Leung D, Allen LG. 2016. Year-class strength predicts commercial catch 11 years later for white seabass, Atractoscion nobilis, off southern California. California Fish and Game 102: 175-82.
Lindegren M, Checkley DM, Ohman MD, Koslow JA, Goericke R. 2016. Resilience and stability of a pelagic marine ecosystem. Proceedings of the Royal Society of London B: Biological Sciences 283.
Marshall KN, Kaplan IC, Hodgson EE, Hermann A, Busch DS, et al. 2017. Risks of ocean acidification in the California Current food web and fisheries: ecosystem model projections. Global Change Biology 23: 1525-39.
Mattern JP, Edwards CA. 2017. Simple parameter estimation for complex models — Testing evolutionary techniques on 3-dimensional biogeochemical ocean models. Journal of Marine Systems 165: 139-52.
Mattern JP, Song H, Edwards CA, Moore AM, Fiechter J. 2017. Data assimilation of physical and chlorophyll a observations in the California Current System using two biogeochemical models. Ocean Modelling 109: 55-71.
McClatchie S, Goericke R, Leising A, Auth TD, Bjorkstedt E, et al. 2016. State of the California Current 2015-16: Comparisons with the 1997-98 El Nino. California Cooperative Oceanic Fisheries Investigations Reports 57: 5-61.
McClatchie S, Hendy IL, Thompson AR, Watson W. 2017. Collapse and recovery of forage fish populations prior to commercial exploitation. Geophysical Research Letters 44: 1877-85.
McClatchie S, Thompson AR, Alin SR, Siedlecki S, Watson W, Bograd SJ. 2016. The influence of Pacific Equatorial Water on fish diversity in the southern California Current System. Journal of Geophysical Research: Oceans 121: 6121-36.
Perretti CT, Sedarat M. 2016. The influence of the El Nino Southern Oscillation on paralarval market squid (Doryteuthis opalescens). Fisheries Oceanography 25: 491-99. Poloczanska ES, Burrows MT, Brown CJ, García Molinos J, Halpern BS, et al. 2016. Responses of Marine Organisms to Climate Change across Oceans. Frontiers in Marine Science 3 (62).
Pozo Buil M, Di Lorenzo E. 2017. Decadal dynamics and predictability of oxygen and subsurface tracers in the California Current System. Geophysical Research Letters.
Pribyl AL, Hyde JR, Robertson L, Vetter R. 2016. Defining an ideal temperature range for the northern subpopulation of Pacific sardine, Sardinops sagax caeruleus. Environmental Biology of Fishes 99: 275-91.
Punt AE, MacCall AD, Essington TE, Francis TB, Hurtado-Ferro F, et al. 2016. Exploring the implications of the harvest control rule for Pacific sardine, accounting for predator dynamics: A MICE model. Ecological Modelling 337: 79-95.
Ramirez-Rodriguez M. 2017. A Profitability Analysis of Catch Quotas for the Pacific Hake Fishery in the Gulf of California. North American Journal of Fisheries Management 37: 23-29.
Renault L, Deutsch C, McWilliams JC, Frenzel H, Liang J-H, Colas F. 2016. Partial decoupling of primary productivity from upwelling in the California Current system. Nature Geoscience 9: 505.
Rudnick DL, Zaba KD, Todd RE, Davis RE. 2017. A climatology of the California Current System from a network of underwater gliders. Progress in Oceanography.
Sakuma KM, Field JC, Mantua NJ, Ralston S, Marinovic BB, Carrion CN. 2016. Anomalous epipelagic micronekton assemblage patterns in the neritic waters of the California Current in spring 2015 during a period of extreme ocean conditions. California Cooperative Oceanic Fisheries Investigations Reports 57: 163-83.
Santora JA, Sydeman WJ, Schroeder ID, Field JC, Miller RR, Wells BK. 2017. Persistence of trophic hotspots and relation to human impacts within an upwelling marine ecosystem. Ecological Applications 27: 560-74.
Sato KN, Levin LA, Schiff K. 2017. Habitat compression and expansion of sea urchins in response to changing climate conditions on the California continental shelf and slope (1994–2013). Deep Sea Research Part II: Topical Studies in Oceanography 137: 377-89.
Scales K, Hazen EL, Maxwell S, Dewar H, Kohin S, et al. 2016, In Press. Fit to predict? Ecoinformatics for modeling dynamic habitat suitability for highly migratory marine species. Ecological Applications.
Siegelman-Charbit L, Koslow JA, Jacox MG, Hazen EL, Bograd SJ, et al. 2016, In Press. Physical forcing on fish population dynamics in the southern California Current System. Fisheries Oceanography.
Song H, Edwards CA, Moore AM, Fiech.ter J. 2016. Data assimilation in a coupled physical-biogeochemical model of the California current system using an incremental lognormal 4-dimensional variational approach: Part 3-Assimilation in a realistic context using satellite and in situ observations. Ocean Modelling 106: 159-72.
Song H, Edwards CA, Moore AM, Fiechter J. 2016. Data assimilation in a coupled physical-biogeochemical model of the California Current System using an incremental lognormal 4-dimensional variational approach: Part 1-Model formulation and biological data assimilation twin experiments. Ocean Modelling 106: 131-45.
Song H, Edwards CA, Moore AM, Fiechter J. 2016. Data assimilation in a coupled physical-biogeochemical model of the California Current System using an incremental lognormal 4-dimensional variational approach: Part 2-Joint physical and biological data assimilation twin experiments. Ocean Modelling 106: 146-58.
Storch LS, Glaser SM, Ye H, Rosenberg AA. 2017. Stock assessment and end-to-end ecosystem models alter dynamics of fisheries data. PLOS ONE 12.
Stukel MR, Aluwihare LI, Barbeau KA, Chekalyuk AM, Goericke R, et al. 2017. Mesoscale ocean fronts enhance carbon export due to gravitational sinking and subduction. Proceedings of the National Academy of Sciences of the United States of America 114: 1252-57.
Thayer JA, MacCall AD, Davison PC, Sydeman WJ. 2017. California Anchovy Population Remains Low, 2012-2016. California Cooperative Oceanic Fisheries Investigations Reports 58.
Thompson AR, Hyde JR, Watson W, Chen DC, Guo LW 2016. Rockfish assemblage structure and spawning locations in southern California identified through larval sampling. Marine Ecology Progress Series 547:177-192.
Tommasi D, Stock CA, Pegion K, Vecchi GA, Methot RD, et al. 2017. Improved management of small pelagic fisheries through seasonal climate prediction. Ecological Applications 27: 378-88.
Urmy SS, Horne JK. 2016. Multi-scale responses of scattering layers to environmental variability in Monterey Bay, California. Deep Sea Research Part I: Oceanographic Research Papers 113: 22-32.
Valentine DL, Fisher GB, Pizarro O, Kaiser CL, Yoerger D, et al. 2016. Autonomous Marine Robotic Technology Reveals an Expansive Benthic Bacterial Community Relevant to Regional Nitrogen Biogeochemistry. Environmental Science & Technology 50: 11057-65.
Valle-Rodríguez J, Trasviña-Castro A. 2017. Poleward currents from coastal altimetry: The west coast of Southern Baja California, Mexico. Advances in Space Research 59: 2313-24.
Wheeler SG, Anderson TW, Bell TW, Morgan SG, Hobbs JA. 2017. Regional productivity predicts individual growth and recruitment of rockfishes in a northern California upwelling system. Limnology and Oceanography 62: 754-67.
Books/Articles-in-Books:Brander K. 2017. Plankton and Fisheries In Marine Plankton: A Practical Guide to Ecology, Methodology, and Taxonomy ed. C Castellani, pp. 81-88. Plymouth, UK: Oxford University Press.
Ph.D. Dissertations:Chen D. 2017: Larval rockfish diversity abundance dynamics in association with a marine protected area in the Southern California Bight. University of San Diego, San Diego, CA.
Hogle SL. 2016: Indicators of Iron Metabolism in Marine Microbial Genomes and Ecosystems. University of California San Diego. 270 pp.
Submitted and In Press:Moore AM, Jacox MG, Crawford W, Laughlin B, Edwards CA, Fiechter J. 2016, In Press. The impact of the ocean observing system on estimates of the California Current circulation spanning three decades. Submitted to Progress in Oceanography.
Journal Articles:
Asch, R. G., 2015: Climate change and decadal shifts in the phenology of larval fishes in the California Current ecosystem. Proceedings of the National Academy of Sciences, 112, E4065-E4074.
Booth, A., 2015: Looking Ahead: Nutrients and Hypoxia. Urban Coast, 5, 190-193.
Checkley, D. M., 2015: Abstract from the Symposium Of The 2014 Calcofi Conference: Predicting The California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 56, 70-71.
Curchitser, E., J. Small, B. Kaufman, W. Large, and K. Hedstrom, 2015: Regional Climate Modeling In The California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 56, 76-77.
Davison, P., J. A. Koslow, and R. J. Kloser, 2015: Acoustic biomass estimation of mesopelagic fishes: backscattering from individuals, populations, and communities. ICES Journal of Marine Science, 72, 1413-1424.
Dunne, J. P., C. A. Stock, and J. G. John, 2015: Representation Of Eastern Boundary Currents In GFDL’S Earth System Models. California Cooperative Oceanic Fisheries Investigations Reports, 56, 72-75.
Edwards, C. A., A. M. Moore, J. P. Mattern, J. Fiechter, H. Song, and M. G. Jacox, 2015: Hindcasting And Nowcasting The Physical And Biological State Of The California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 80-82.
Hannesson, R., 2015: World Fisheries in Crisis? Marine Resource Economics, 30, 251-260.
Jacox, M. G. S., S. J. Bograd, E. L. Hazen, and J. Fiechter, 2015: Sensitivity of the California Current nutrient supply to wind, heat, and remote ocean forcing. Geophysical Research Letters, 42, 5950-5957.
Kahru, M., R. M. Kudela, C. R. Anderson, and B. G. Mitchell, 2015: Optimized merger of ocean chlorophyll algorithms. IEEE Geoscience and Remote Sensing Letters, 12, 2282 – 2285.
Kahru, M., M. G. Jacox, Z. Lee, R. M. Kudela, M. Manzano-Sarabia, and B. G. Mitchell, 2015: Optimized multi-satellite merger of primary production estimates in the California Current using inherent optical properties. Journal of Marine Systems, 147, 94-102.
Kaplan, I. C., 2015: End-To-End Modeling To Predict Global Change Effects In The California Current Ecosystem. California Cooperative Oceanic Fisheries Investigations Reports, 86-87.
Kim, S. Y., and B. D. Cornuelle, 2015: Coastal ocean climatology of temperature and salinity off the Southern California Bight: Seasonal variability, climate index correlation, and linear trend. Progress in Oceanography, 138, Part A, 136-157.
Koslow, J. A., E. F. Miller, and J. A. McGowan, 2015: Dramatic declines in coastal and oceanic fish communities off California. Marine Ecology Progress Series, 538, 221-227.
Lavaniegos, B. E., O. Molina-Gonzalez, and M. Murcia-Riano, 2015: Zooplankton functional groups from the California Current and climate variability during 1997-2013. Oceánides, 30, 45-62.
Leising, A. W., and Coauthors, 2015: State of the California Current 2014-15: Impacts of the Warm-Water “Blob”. California Cooperative Oceanic Fisheries Investigations Reports, 56, 31-69.
Li, Z., J. C. McWilliams, K. Ide, and J. D. Farrara, 2015: Coastal ocean data assimilation using a multi-scale three-dimensional variational scheme. Ocean Dynamics, 65, 1001-1015.
Lindegren, M., D. M. Checkley, M. D. Ohman, J. A. Koslow, and R. Goericke, 2016: Resilience and Stability of a Pelagic Marine Ecosystem. Proceedings of the Royal Society B-Biological Sciences, 283.
Muñoz-Anderson, M., R. Millán-Núñez, R. Hernández-Walls, A. González-Silvera, E. Santamaría-del-Ángel, E. Rojas-Mayoral, and S. Galindo-Bect, 2015: Fitting vertical chlorophyll profiles in the California Current using two Gaussian curves. Limnology and Oceanography: Methods, 13, 416-424.
Nam, S., Y. Takeshita, C. A. Frieder, T. Martz, and J. Ballard, 2015: Seasonal advection of Pacific Equatorial Water alters oxygen and pH in the Southern California Bight. Journal of Geophysical Research: Oceans, 120, 5387-5399.
Netburn, A. N., and J. A. Koslow, 2015: Dissolved oxygen as a constraint on daytime deep scattering layer depth in the southern California current ecosystem. Deep Sea Research Part I: Oceanographic Research Papers, 104, 149-158.
Omand, M. M., and A. Mahadevan, 2015: The shape of the oceanic nitracline. Biogeosciences, 12, 3273-3287.
Raghukumar, K., C. A. Edwards, N. L. Goebel, G. Broquet, M. Veneziani, A. M. Moore, and J. P. Zehr, 2015: Impact of assimilating physical oceanographic data on modeled ecosystem dynamics in the California Current System. Progress in Oceanography, 138, Part B, 546-558.
Rose, K. A., and Coauthors, 2015: End-To-End Modeling Of Sardine And Anchovy In The California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 78-79.
Rudnick, D. L., 2016: Ocean Research Enabled by Underwater Gliders. Annual Review of Marine Science, 8, 519-541.
Santora, J. A., and W. J. Sydeman, 2015: Persistence of hotspots and variability of seabird species richness and abundance in the southern California Current. Ecosphere, 6, 1-19.
Seegers, B. N., and Coauthors, 2015: Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60, 754-764.
Seo, H., A. J. Miller, and J. R. Norris, 2015: Effect Of Eddy-Wind Interaction On Ekman Pumping And Eddy Kinetic Energy: A Regional Coupled Modeling Study For The California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 56, 83.
Siedlecki, S. A., A. Hermann, N. Bond, S. Alin, R. Feely, I. C. Kaplan, and J. Newton, 2015: Predicting Hypoxia And Ocean Acidification Of The Coastal Waters Of The Ccs: What Do We Know And What Can We Expect? California Cooperative Oceanic Fisheries Investigations Reports, 84-85.
Stukel, M. R., M. Kahru, C. R. Benitez-Nelson, M. Decima, R. Goericke, M. R. Landry, and M. D. Ohman, 2015: Using Lagrangian-based process studies to test satellite algorithms of vertical carbon flux in the eastern North Pacific Ocean. J. Geophys. Res. Oceans, 120, 7208-7222.
Taylor, A. G., M. R. Landry, K. E. Selph, and J. J. Wokuluk, 2015: Temporal and spatial patterns of microbial community biomass and composition in the Southern California Current Ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 117-128.
Venrick, E., 2015: Phytoplankton Species in the California Current System off Southern California: the Spatial Dimensions. California Cooperative Oceanic Fisheries Investigations Reports, 56, 168-184.
Ye, H., E. Deyle, and G. Sugihara, 2015: Predicting The Future In A Nonlinear World. California Cooperative Oceanic Fisheries Investigations Reports, 56, 88-91.
Books/Articles-in-Books:
Bjorkstedt, E.P., J. Field, et al. (2016) California’s marine fisheries: trade-offs in transition. In: E. Zavaleta & H. Mooney (Eds). Ecosystems of California. UC Press, Oakland, California: 779-815.
Bograd, S. J., A. W. Leising, and E. L. Hazen, 2016: Oceanography. Ecosystems of California, H. Mooney, and E. Zavaleta, Eds., University of California Press, 95-105.
Conference Proceedings/Workshops:
Checkley, D. M., Jr., 2015: Oral presentation: Biological Response to El Niño Winter 2015-2016. Outlook: El Niño, Storms and Ocean Conditions, Scripps Institution of Oceanography.
Checkley, D. M., Jr., 2015: Oral presentation: El Niño, Past Impacts on California’s Living Marine Resources and the Role of Ocean Observing and CalCOFI. Changing Ocean Conditions: Understanding El Niño’s Impacts on California’s Living Marine Resources Through Ocean Observations, Ocean Protection Council Workshop, Sacremento, CA.
Dorval, E., 2015: Oral presentation: El Niño Impacts on Market Squid Abundance and Fishery dynamics. Changing Ocean Conditions: Understanding El Niño’s Impacts on California’s Living Marine Resources Through Ocean Observations, Ocean Protection Council Workshop, Sacremento, CA.
Peach, C., 2015: Oral presentation: From Physics to Fish: The Role of Ocean Observing and CalCOFI in Educating Californians about their Ocean. Changing Ocean Conditions: Understanding El Niño’s Impacts on California’s Living Marine Resources Through Ocean Observations, Ocean Protection Council Workshop, Sacramento, CA.
Rogers-Bennett, L., 2015: Oral presentation: California’s Marine Resources, El Niño and CalCOFI. Changing Ocean Conditions: Understanding El Niño’s Impacts on California’s Living Marine Resources Through Ocean Observations, Ocean Protection Council Workshop, Sacremento, CA.
Ph.D. Dissertations:
Bowlin, N., 2016: Ontogenetic changes in the distribution and abundance of early life history stages of mesopelagic fishes off California, Oceanography, UC San Diego.
Hogle, S., 2016: Indicators of Iron Metabolism in Marine Microbial Genomes and Ecosystems. Ph..D., Oceanography, UC San Diego.
Jones, W. A., 2016: The Santa Barbara Basin Fish Assemblage in the Last Two Millennia Inferred from Otoliths in Sediment Cores. Ph.D., Oceanography, UC San Diego, 140 pp.
Muñoz-Anderson, M., 2016: Ajuste, Modelación y Variabilidad de los perfiles verticales de clorofila en la región CalCoFi de la Corriente de California. Ph.D., Coastal Oceanography Program, Universidad Autónoma de Baja California.
Vu, E. T. A., 2015: Habitat use of calling baleen whales in the southern California Current Ecosystem. Ph.D., Oceanography, UC San Diego.
Submitted and In Press:
Espinoza-Leal, L., and B. E. Lavaniegos, In Press: Seasonal variability of pelagic amphipods off the Baja California Peninesula during La Niña 2011. California Cooperative Oceanic Fisheries Investigations Reports, 57.
Koslow, J. A., and P. Davison, In Press: Productivity and biomass of fishes in the California Current Large Marine Ecosystem: comparison of fishery-dependent and independent time series. Environmental Development.
Kuo, T. C., S. Mandal, A. Yamauchi, and C. H. Hsieh, In Press: Life history traits and exploitation affect the spatial mean-variance relationship in fish abundance. Ecology.
MacCall, A. D., W. J. Sydeman, P. C. Davison, and J. A. Thayer, In Press: Recent collapse of northern anchovy off California. Fisheries Research.
Muhling, B., M. Lindegren, L. Worsøe Clausen, A. Hobday, and P. Lehodey, In Press: Impacts of Climate Change on Pelagic Fish and Fisheries. The Impacts of Climate Change on Fisheries and Aquaculture, B. F. Phillips, and M. Pérez-Ramírez, Eds.
Thompson, A. R., J. R. Hyde, W. Watson, D. Chen, C., and L. W. Guo, In press: Rockfish assemblage structure and spawning locations in southern California identified through larval sampling. Marine Ecology Progress Series.Watson, W., S.R. Charter, et al. (In Press) Early larvae of the swordspine rockfish, Sebastes ensifer Chen 1971 (Pisces: Sebastidae), identified by molecular methods. Fishery Bulletin.
Journal Articles:
Bednarsek, N., M.D. Ohman (2015) Changes in pteropod distributions and shell dissolution across a frontal system in the California Current System. Marine Ecology Progress Series, 523, 93-103.
Bograd, S.J., M.P. Buil, et al. (2015) Changes in source waters to the Southern California Bight. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 42-52.
Booth, J.A.T., C.B. Woodson, et al. (2014) Patterns and potential drivers of declining oxygen content along the southern California coast. Limnology and Oceanography, 59(4), 1127-1138.
Campbell, G.S., L. Thomas, et al. (2015) Inter-annual and seasonal trends in cetacean distribution, density and abundance off southern California. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 143-157.
Checkley, D.M., M. Lindegren (2014) Sea Surface Temperature Variability at the Scripps Institution of Oceanography Pier. Journal of Physical Oceanography, 44(11), 2877-2892.
Davis, A., E. Di Lorenzo (2015) Interannual forcing mechanisms of California Current transports I: Meridional Currents. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 18-30.
Davis, A., E. Di Lorenzo (2015) Interannual forcing mechanisms of California Current transports II: Mesoscale eddies. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 31-41.
Davison, P., A. Lara-Lopez, et al. (2015) Mesopelagic fish biomass in the southern California current ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 129-142.
Davison, P.C., J.A. Koslow, et al. (2015) Acoustic biomass estimation of mesopelagic fish: backscattering from individuals, populations, and communities. ICES Journal of Marine Science: Journal du Conseil.
Douglas, A., A. Havron, et al. (2014) Seasonal distribution and abundance of cetaceans off Southern California estimated from CalCOFI cruise data from 2004 to 2008. Fisheries Bulletin, 112, 197-220.
Fiechter, J., E.N. Curchitser, et al. (2014) Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography. Global Biogeochemical Cycles, 28(4), 371-385.
Goericke, R., S.J. Bograd, et al. (2015) Denitrification and flushing of the Santa Barbara Basin bottom waters. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 53-60.
Goericke, R., M.D. Ohman (2015) Introduction to CCE-LTER: Responses of the California Current Ecosystem to climate forcing. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 1-5.
Jacox, M.G., C.A. Edwards, et al. (2015) The potential for improving remote primary productivity estimates through subsurface chlorophyll and irradiance measurement. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 107-116.
Jacox, M.G., A.M. Moore, et al. (2014) Spatially resolved upwelling in the California Current System and its connections to climate variability. Geophysical Research Letters, 41(9), 3189-3196.
Johnston, T.M.S., D.L. Rudnick (2015) Trapped diurnal internal tides, propagating semidiurnal internal tides, and mixing estimates in the California Current System from sustained glider observations, 2006–2012. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 61-78.
Kahru, M., M.G. Jacox, et al. (2014) Optimized multi-satellite merger of primary production estimates in the California Current using inherent optical properties. Journal of Marine Systems.
Kahru, M., R. Kudela, et al. (2014) Evaluation of Satellite Retrievals of Ocean Chlorophyll-a in the California Current. Remote Sensing, 6(9), 8524-8540.
Kahru, M., Z. Lee, et al. (2015) Multi-satellite time series of inherent optical properties in the California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 91-106.
Kang, Y.-S., M.D. Ohman (2014) Comparison of long-term trends of zooplankton from two marine ecosystems across the North Pacific: Northeastern Asian Marginal Sea and Southern California Current System. CalCOFI Reports, 55, 169-182.
Kang, Y.-S., M.D. Ohman (2014) Comparison of long-term trends of zooplankton from two marine ecosystems across the North Pacific: Northeastern Asian Marginal Sea and Southern California Current System. CalCOFI Reports, 55, 169-182.
Koslow, J., Davison, P. & Lara-Lopez, A. (2014) Mesopelagic fishes in the California Current: ecosystem role, climate change impacts and the need for global observations of marine fish populations. IMBER Newsletter n°27 (1.2).
Koslow, J.A., J. Couture (2015) Pacific Ocean observation programs: Gaps in ecological time series. Marine Policy, 51, 408-414.
Lee, Z., J. Marra, et al. (2014) Estimating oceanic primary productivity from ocean color remote sensing: A strategic assessment. Journal of Marine Systems.
Leising, A.W., I.D. Schroeder, et al. (2014) The state of the California Current, 2013-14: El Niño looming. CalCOFI Reports, 55, 51-87.
Marshall, K.N., I.C. Kaplan, et al. (2014) New target fisheries lead to spatially variable food web effects in an ecosystem model of the California Current. Ecological Modelling, 289, 96-105.
Martz, T., U. Send, et al. (2014) Dynamic variability of biogeochemical ratios in the Southern California Current System. Geophysical Research Letters, 41(7), 2496-2501.
Mazloff, M.R., S.T. Gille, et al. (2014) Improving the geoid: Combining altimetry and mean dynamic topography in the California coastal ocean. Geophysical Research Letters, 41(24), 8944-8952.
Miller, A.J., H. Song, et al. (2015) The physical oceanographic environment during the CCE-LTER Years: Changes in climate and concepts. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 6-17.
Miller, E.F., B. Erisman (2014) Long-term trends of southern California’s kelp and barred sand bass populations: a fishery-independent assessment. California Cooperative Oceanic Fisheries Investigations Reports, 55.
Powell, J.R., M.D. Ohman (2014) Changes in zooplankton habitat, behavior, and acoustic scattering characteristics across glider-resolved fronts in the Southern California Current System. Progress in Oceanography.
Powell, J.R., M.D. Ohman (2015) Covariability of zooplankton gradients with glider-detected density fronts in the Southern California Current System. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 79-90.
Sheng, M., T. Zui, et al. (2014) Estimation of Marine Primary Productivity From Satellite-Derived Phytoplankton Absorption Data. Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of, 7(7), 3084-3092.
Smith, K.L., A.D. Sherman, et al. (2014) Large salp bloom export from the upper ocean and benthic community response in the abyssal northeast Pacific: Day to week resolution. Journal Limnology and Oceanography, 59(3), 745-757.
Sydeman, W.J., S.A. Thompson, et al. (2015) Climate–ecosystem change off southern California: Time-dependent seabird predator–prey numerical responses. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 158-170.
Taylor, A.G., M.R. Landry, et al. (2015) Temporal and spatial patterns of microbial community biomass and composition in the Southern California Current Ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography, 112, 117-128.
Thompson, A.R., T.D. Auth, et al. (2014) Dynamics of larval fish assemblages in the California Current System: a comparative study between Oregon and southern California. Marine Ecology Progress Series, 506, 193-212.
Weber, E.D., Y. Chao, et al. (2015) Transport patterns of Pacific sardine Sardinops sagax eggs and larvae in the California Current System. Deep Sea Research Part I: Oceanographic Research Papers, 100(0), 127-139.
Books/Articles-in-Books:
Polovina, J. J., A. J. Hobday, J. A. Koslow, and V. S. Saba. (2014) Open Ocean Systems. The sea: ideas and observations on progress in the study of the seas, M. J. Fogerty, and J. J. McCarthy, Eds., Harvard University Press, 429-473.
Reports:
Holder, A., L. Ryley, et al. (2014) Review Of Selected California Fisheries For 2013: Coastal Pelagic Finfish, Market Squid, Groundfish, Highly Migratory Species, Dungeness Crab, Basses, Surfperch, Abalone, Kelp And Edible Algae, And Marine Aquaculture. In: D. Porzio (Ed). CalCOFI Reports. California Department of Fish and Wildlife: 11-50.
Manzano, M., M. Kahru, et al. (2014) El sistema de la corriente de California: beneficios y retos para México y Estados Unidos. La Jornada Ecologica, Mexico.
Wells, B., R.D. Brodeur, et al. (2014) Coastal Pelagics and Forage Fishes. In: P. Levin, B. Wells & M. Sheer (Eds). California Current Integrated Ecosystem Assessment: Phase III Report. NOAA NW Fisheries Science Center, La Jolla, CA.
Williams, G., K. Andrews, et al. (2014) Ecological Integrity. In: P. Levin, B. Wells & M. Sheer (Eds). California Current Integrated Ecosystem Assessment: Phase III Report. NOAA SW Fisheries Science Center, La Jolla, CA.
Conference Proceedings/Workshops:
Kahru, M., R. Kudela, and G. Mitchell, 2014: The poor state of high Chl-a retrievals in the California Current using satellite ocean color. NASA Ocean Color research team meeting, Silver Spring, MD.
Koslow, J. A., 2014: The Effects of Climate on Productivity and Biomass in the California Current LME. 3rd International LME Conference, Swakopmund, Namibia.
Koslow, J. A., and J. Couture, 2014: A model for global cooperative ocean observation networks as the basis for ecosystem-based management, ocean climate research and assessment of ecosystem change. IMBER Symposium, Bergen, Norway.
Koslow, J. A., P. Davison, A. Lara-Lopez, and M. D. Ohman, 2014: Meso- and epipelagic fishes in the southern California Current System, ecological interactions and oceanographic influences on abundance: how can we model them? IMBER Symposium, Bergen, Norway.
Koslow, J. A., E. F. Miller, and J. A. McGowan, 2014: Dramatic declines in coastal and oceanic fish communities off California linked to climate. CalCOFI Conferece, La Jolla, CA.
Koslow, J. A., and M. Wright, 2014: Sampling requirements for long-term ecological monitoring of fish communities; Poster. CalCOFI Conference, La Jolla, CA.
Koslow, J. A., and M. Wright, 2014: Design of ocean observation systems: sampling requirements to monitor fish population and community trends as Essential Ocean Variables. PICES Conference, Yeosu, Korea.
Ohman, M. D., 2014: California Current Ecosystem Dynamics. Invited seminar, Observatoire Océanologique de Villefranche-sur-Mer, Observatoire Océanologique de Villefranche-sur-Mer, France.
Ohman, M. D., 2014: Zooplankton as sentinels of a changing climate. Invited seminar, Mediterranean Institute of Oceanography, University of Aix-Marseille, Luminy, France.
Ohman, M. D., 2014: Poster: Multiple Time Scales of Ecosystem Forcing in the California Current Ecosystem. Gordon Research Conference, Ocean Global Change Biology Waterville Valley, New Hampshire.
Ohman, M. D., 2014: Autonomous ocean measurements in the California Current Ecosystem. 2nd Seafloor Observatory Conference, Xiamen, China.
Ohman, M. D., U. Send, D. L. Rudnick, D. Demer, T. Martz, and R. Feely, 2014: Beyond the mean: ‘Event’-scale phenomena and their relationship to ecosystem forecasting. CalCOFI Conference, Scripps Institution of Oceanography, La Jolla, CA.
Ohman, M. D., 2015: The California Current System: What makes the west coast the blue Serengeti? Whalefest 2015, Monterey, CA.
Ohman, M. D., 2015: Zooplankton: Sentinels of a changing ocean. Southern CA Marine Mammal Workshop, Newport Beach, CA.
Ohman, M. D., 2015: Changes in pteropod distributions and shell dissolution across a frontal system in the California Current Ecosystem. ASLO, Granada, Spain.
Sala, L., and M. D. Ohman, 2014: Zooplankton of the San Diego Region website. CalCOFI Conference, Scripps Institution of Oceanography, La Jolla, CA.
Send, U., M. D. Ohman, and D. Demer, 2014: Continuous multidisciplinary observations in the southern California Current elucidate events in climate, the ecosystem, and fisheries. Brown bag presentation, NOAA, Silver Spring, MD.
Sugihara, G., 2014: Causality and Correlation. Oceanography Seminar at Texas A&M Galveston, Galveston, Texas.
Sugihara, G., 2014: Causality and Correlation. University-wide Public Lecture, University of Chicago, Chicago, Illinois.
Sugihara, G., 2014: Causality and Correlation. Robert May Lecture in Theoretical Ecology, Princeton University, New Jersey.
Sugihara, G., 2014: Causality and Correlation. Lecture on Systemic Risk, Session Moderator, London School of Economics, England.
Sugihara, G., 2014: Causality and Correlation. Ecologocal Society of America Annual Meeting, Sacramento, CA.
Sugihara, G., 2014: Causality and Correlation. Friday Marine Biology Seminar, Scripps Institution of Oceanography, La Jolla, CA.
Sugihara, G., 2014: Causality and Correlation, Keynote Lecture. Swedish Royal Academy of Science, Stockholm.
Sugihara, G., 2015: Causality and Correlation. Fisheries and the Environment (FATE), Southwest Fisheries Science Center, La Jolla, CA.
Sugihara, G., 2015: Causality and Correlation. American Society of Limnology and Oceanography, Madrid, Spain.
Sugihara, G., 2015: Causality and Correlation. Institute for Systems Biology International Symposium, Seattle, WA.
Sugihara, G., 2015: Causality and Correlation. Colloquim Lecture in Mathematics, The Courant Institute, NYU, New York.
Thompson Andrew, R., 2014: Impacts of basin-scale variability on ichthyoplankton assemblages throughout the California Current Ecosystem. CalCOFI Conference, La Jolla, CA.
Ph.D. Dissertations:
Perretti, C. (2014) The boom and bust dynamics of California market squid (Doryteuthis opalescens). University Of California, San Diego: 117.
Submitted and In Press:
Asch, R. (In Press) Assessing The School Trap Hypothesis: An Analysis Of Habitat Overlap Of Three Coastal Pelagic Fish Species In The Southern California Current Ecosystem. Fisheries Bulletin.
Asch, R. (In Press) Climate Change And Decadal Shifts In The Phenology Of Larval Fishes In The California Current Ecosystem. Proceedings of the National Academy of Sciences.
Koslow, J.A., E.R. Miller, et al. (In Press) Dramatic declines in coastal and oceanic fish communities off California linked to climate. Marine Ecology Progress Series.
Koslow, J., P. Davison (2015) The Effects of Climate on Productivity and Biomass in the California Current Large Marine Ecosystem. Environmental Development.
Koslow, J.A., P. Davison, et al. (2014) Epipelagic and mesopelagic fishes in the southern California Current System: Ecological interactions and oceanographic influences on their abundance. Journal of Marine Systems, 138, 20-28.
Rose, K.A., J. Fiechter, et al. (In Press) Demonstration of a fully-coupled end-to-end model for small pelagic fish using sardine and anchovy in the California Current. Progress in Oceanography.
Taylor, A.G., M.R. Landry (In Press) Patterns and variability in phytoplankton size structure, biomass and community composition across the southern California Current and adjacent ocean ecosystems. Limnology and Oceanography.
Watson, W., S.R. Charter, et al. (In Press) Early larvae of the swordspine rockfish, Sebastes ensifer Chen 1971 (Pisces: Sebastidae), identified by molecular methods. Fishery Bulletin.
Journal Articles:
Chenillat, F., P. Riviere, X. Capet, P. J. S. Franks, and B. Blanke. California Coastal Upwelling Onset Variability: Cross-Shore and Bottom-Up Propagation in the Planktonic Ecosystem. PLoS ONE, 8. (2013)
Davison, P., D. M. Checkley, A. J. Koslow, and J. Barlow. Carbon export mediated by mesopelagic fishes in the northeast Pacific Ocean. Progress in Oceanography, 116, 14-30. (2013)
Deyle, E. R., and Coauthors. Predicting climate effects on Pacific sardine. Proceedings of the National Academy of Sciences, 110, 6430-6435. (2013)
Dupont, C. L., J. Larsson, S. Yooseph, K. Ininbergs, J. Goll, J. Asplund-Samuelsson, J. P. McCrow, N. Celepli, L. Z. Allen, M. Ekman, A. J. Lucas, Å. Hagström, M. Thiagarajan, B. Brindefalk, A. R. Richter, A. F. Andersson, A. Tenney, D. Lundin, A. Tovchigrechko, J. A. A. Nylander, D. Brami, J. H. Badger, A. E. Allen, D. B. Rusch, J. Hoffman, E. Norrby, R. Friedman, J. Pinhassi, J. C. Venter, and B. Bergman. Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition. PLoS ONE, 9. (2014)
Emerson, S. Annual net community production and the biological carbon flux in the ocean. Global Biogeochemical Cycles, 28, 14-28. (2014)
Franks, P. J. S., E. Di Lorenzo, N. L. Goebel, F. Chenillat, P. Riviere, C. A. Edward, and A. J. Miller. Modeling Physical-Biological Responses to Climate Change in the California Current System. Oceanography, 26, 26-33. (2013)
Freibott, A., L. Linarcre, and M. R. Landry. A slide preparation technique for light microscopy analysis of ciliates preserved in acid Lugol’s fixative. Limnology and Oceanography: Methods, 12, 54-62. (2014)
Jacobson, L. D., and S. McClatchie. Comment on temperature-dependent stock–recruit modeling for Pacific sardine (Sardinops sagax) in Jacobson and MacCall (1995), McClatchie et al. (2010), and Lindegren and Checkley (2013). Canadian Journal of Fisheries and Aquatic Sciences, 70, 1566-1569. (2013)
Kaplan , I. C., C. J. Brown, E. A. Fulton, I. A. Gray, J. C. Field and A. D. M. Smith. Impacts of depleting forage species in the California Current. Environmental Conservation 40(04):380-393. (2013)
Kharbush, J. J., J. A. Ugalde, S. L. Hogle, E. E. Allen, and L. I. Aluwihare. Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current. Applied and environmental microbiology, 79, 7491-7501. (2013)
Kim, S. Y., B. D. Cornuelle, E. J. Terrill, B. Jones, L. Washburn, M. A. Moline, J. D. Paduan, N. Garfield, J. L. Largier, G. Crawford, and P. Michael Kosro. Poleward propagating subinertial alongshore surface currents off the U.S. West Coast. Journal of Geophysical Research: Oceans, 118, 6791-6806. (2013)
Koslow, A. J., and J. Couture. Ocean sciences: Follow the fish. Nature, 502, 163-164. (2013)
Koslow, A. J., R. Goericke, and W. Watson. Fish assemblages in the Southern California Current: relationships with climate, 1951–2008. Fisheries Oceanography, 22, 207-219. (2013)
Lindegren, M., D. M. Checkley, T. Rouyer, A. D. MacCall, and N. C. Stenseth. Climate, fishing, and fluctuations of sardine and anchovy in the California Current. Proceedings of the National Academy of Sciences of the United States of America 110(33): 13672-13677. (2013)
Luo, Jessica, Y., Grassian, B., Tang, D., Irisson, J., Greer, A.T., Guigand, C.M., McClatchie, S., Cowen, R.K. Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a meso-scale front. Marine Ecology Progress Series 510: 129-149. (2014)
Mateos, E., S. G. Marinone, and M. F. Lavín. Numerical modeling of the coastal circulation off northern Baja California and southern California. Continental Shelf Research, 58, 50-66. (2013)
McClatchie, Sam, Field, J.C., Duffy-Anderson, J., Peterson, W.T., Watson, W., Lyczkowski-Shultz, J., Hare, J.A., Griffith, D., Weber, E.D., Hanisko, D.S., Zapfe, G., Goericke, R. Long time series in U.S. fisheries oceanography. Oceanography. 27(4): 48–67. (2014)
Meinvielle, M., and G. C. Johnson. Decadal water-property trends in the California Undercurrent, with implications for ocean acidification. Journal of Geophysical Research: Oceans, 118, 6687-6703. (2013)
Munro, D. R., P. D. Quay, L. W. Juranek, and R. Goericke. Biological production rates off the southern California coast estimated from triple O2 isotopes and O2:Ar gas ratios. Limnology and Oceanography, 58, 1312-1328. (2013)
Navarro, G., and J. Ruiz. Hysteresis conditions the vertical position of deep chlorophyll maximum in the temperate ocean. Global Biogeochemical Cycles, 27, 1013–1022. (2013)
Nieto, Karen, McClatchie, S., Weber, E.D and C. Lennert-Cody. Effect of mesoscale eddies and streamers on sardine spawning habitat and recruitment success off southern and central California. Journal of Geophysical Research doi: 10.1002/2014JC010251. (2014)
Ohman, M. D., K. Barbeau, P. J. S. Franks, R. Goericke, M. R. Landry, and A. J. Miller. Ecological transitions in a coastal upwelling ecosystem. Oceanography, 26, 210-219. (2013)
Ohman, M. D., D. L. Rudnick, A. Chekalyuk, R. E. Davis, R. A. Feeley, M. Kahru, H.-J. Kim, M. R. Landry, T. R. Martz, C. L. Sabine, and U. Send. Autonomous ocean measurements in the California Current Ecosystem. Oceanography, 26, 18-25. (2013)
Palacios, D. M., E. L. Hazen, I. D. Schroeder, and S. J. Bograd. Modeling the temperature-nitrate relationship in the coastal upwelling domain of the California Current. Journal of Geophysical Research: Oceans, 118, 3223-3239. (2013)
Petrik, C. M., G. A. Jackson, and D. M. Checkley Jr. Aggregates and their distributions determined from LOPC observations made using an autonomous profiling float. Deep Sea Research Part I: Oceanographic Research Papers 74:64-81. (2013)
Ralston, S. and I. J. Stewart. Anomalous distributions of pelagic juvenile rockfish on the U.S. West Coast in 2005 and 2006. California Cooperative Oceanic Fisheries Investigations Reports 54:155-166. (2013)
Roach, L. D., C. D. Charles, D. B. Field, and T. P. Guilderson. Foraminiferal radiocarbon record of northeast Pacific decadal subsurface variability. Journal of Geophysical Research: Oceans, 118, 4317-4333. (2013)
Smith, K. L., H. A. Ruhl, M. Kahru, C. L. Huffard, and A. D. Sherman. Deep ocean communities impacted by changing climate over 24 y in the abyssal northeast Pacific Ocean. Proceedings of the National Academy of Sciences. (2013)
Stock, C. A., J. P. Dunne, and J. G. John. Global-scale carbon and energy flows through the marine planktonic food web: An analysis with a coupled physical–biological model. Progress in Oceanography, 120, 1-28. (2014)
Sydeman, W. J., S. A. Thompson, M. García-Reyes, M. Kahru, W. T. Peterson, and J. L. Largier. Multivariate ocean-climate indicators (MOCI) for the central California Current: Environmental change, 1990–2010. Progress in Oceanography, 120, 352-369. (2014)
Weber, E. D. and T. Moore. Corrected conversion algorithms for the CalCOFI station grid and their implementation in several computer languages. California Cooperative Oceanic Fisheries Investigations Reports 54:37-71. (2013)
Wells, B. K., I. D. Schroeder, J. A. Santora, E. L. Hazen, S. J. Bograd, E. P. Bjorkstedt, V. Loeb, S. McClatchie, E. D. Weber, W. Watson, A. R. Thompson, W. T. Peterson, R. D. Brodeur, J. Harding, J. Field, K. Sakuma, S. Hayes, N. Mantua, W. J. Sydeman, M. Losekoot, S. A. Thompson, J. L. Largier, S. Y. Kim, F. P. Chavez, C. Barchelo, P. Warzybok, R. Bradley, J. Jahncke, R. Goericke, G. S. Campbell, J. A. Hildebrand, S. R. Melin, R. L. Delong, J. Gomez-Valdez, B. Lavaniegos, G. Gaxiola-Castro, R. T. Golightly, S. R. Schneider, N. C. Lo, R. M. Suryan, A. J. Gladics, C. Horton, A., J. Fisher, C. Morgan, J. Peterson, E. A. Daly, T. D. Auth, and J. Abell. State of the California Current 2012-13: No Such Thing as as “Average” Year. California Cooperative Oceanic Fisheries Investigations Reports, 54, 37-71. (2013)
Whitney, F. A., S. J. Bograd, and T. Ono. Nutrient enrichment of the subarctic Pacific Ocean pycnocline. Geophysical Research Letters, 40, 2200-2205. (2013)
Zwolinski, J. P., and D. A. Demer. Environmental and parental control of Pacific sardine (Sardinops sagax) recruitment. ICES Journal of Marine Science: Journal du Conseil. (2013)
Books/Articles-in-Books:
Lo, N. C., and B. E. Fissel. Stock Assessment Through Egg Production Methods in the US. Biology and Ecology of Sardines and Anchovies, K. Ganias, Ed., CRC Press: Chapter 8, 27pp. (2014)
McClatchie, S. Regional ?sheries oceanography of the California Current System and the CalCOFI program. Springer: 299 pp. (2014)
Reports:
Hazen, E. L., I. D. Schroeder, J. Peterson, W. T. Peterson, W. J. Sydeman, S. A. Thompson, B. K. Wells and S. J. Bograd. Oceanographic and climatic drivers and pressures. Integrated ecosystem assessment of the California Current: Phase II report 2012. P. S. Levin, B. K. Wells and M. B. Sheer. NOAA National Marine Fisheries Service, La Jolla, CA. (2013)
Wells, B. K., R. D. Brodeur, J. C. Field, E. D. Weber, A. R. Thompson, S. McClatchie, P. R. Crone, K. T. Hill and C. Barcelo. Coastal Pelagics and Forage Fishes. California Current Integrated Ecosystem Assessment: Phase III Report, La Jolla, CA. (2014)
Conference Proceedings/Workshops:
Barron, J. A., D. Bukry, D. B. Field, and B. Finney. Response of diatoms and silicoflagellates to climate change and warming in the California Current during the past 250 years and the recent rise of the toxic diatom Pseudo-nitzschia australis. 25th Pacific Climate Workshop. Quaternary International, Pacific Grove, CA. (2013)
Bowlin, N. M., S. McClatchie, A. R. Thompson, P. Hastings, and W. Watson. Ontogeny as a factor affecting availability of mesopelagic fishes for predators.in CalCOFI Annual Conference, La Jolla, CA. (2013)
Campbell, G. S., K. Whitaker, L. Thomas, A. Douglas, J. Calambokidis, and J. A. Hildebrand. Inter-annual and seasonal trends in cetacean distribution, density and abundance in waters off southern California. CALCOFI Conference Presentation, La Jolla, CA. (2013)
Field, J. and A. D. MacCall. A historical perspective on the evolution of ecosystem-based fisheries management in the California Current.in CalCOFI Annual Conference, La Jolla, CA. (2013)
Kowalewska-Kalkowska, H., M. Wereszka, and M. Stramska. Particulate organic carbon in the global ocean: comparison of ocean color satellite and in situ estimates. European Geosciences Union General Assembly 2013, Vienna, Austria. (2013)
Laake, J., Melin, S.R., Delong, R.L., Orr, A. and Harris, J. Female California Sea Lion summer diet and pup growth on San Miguel Island, CalCOFI Annual Conference, La Jolla, CA. (2013)
McClatchie, S., Thompson, A.R., Watson, W. Secular and inter-annual changes in the spawning habitat of forage fish off California, CalCOFI Annual Conference La Jolla, CA. (2013)
Pedler, B. E., L. I. Aluwihare, and F. Azam. Alteration And Efficient Removal Of Ambient Marine Dissolved Organic Matter By A Single Marine Alteromonas Strain.in Ocean Sciences Meeting, Honolulu, HI. (2014)
Ralston, S., J. Field, and K. Sakuma. Long-term variation in a Central California epipelagic forage assemblage.in CalCOFI Annual Conference, La Jolla, CA. (2013)
Reed, E. M. and B. K. Macewicz. Update analysis of age, length, and maturity of Pacific mackerel (Scomber japonicus) collected off San Diego, CA 2009-2012.in CalCOFI Annual Conference, La Jolla, CA. (2014)
Snodgrass, O.E. and Dewar, H. Foraging Ecology of Tunas and Opah in the California Current, CalCOFI Annual Conference, La Jolla, CA. (2013)
Thompson, A.R., Watson, W., Bowlin, N.M., Adam, T., McClatchie, S. and Weber, E.D. Inter-decadal changes in biodiversity in larval fish assemblages off southern California CalCOFI Annual Conference, La Jolla, CA. (2013)
Weber, E.D. and Thompson, A.R. Ichthyoplankton community composition as a predictor of Pacific Sardine ( Sardinops sagax ) recruitment success, CalCOFI Annual Conference, La Jolla, CA. (2013)
Zwolinski, J. P., D. A. Demer, G. Cutter, B. Elliot, S. Mau, D. Murfin, J. S. Renfree, K. Stierhoff, T. S. Sessions, and B. K. Macewicz. Distribution and abundance of forage fish species based on acoustic-trawl surveys between 2006 and 2013.in CalCOFI Annual Conference, La Jolla, CA. (2013)
Ph.D. Dissertations:
Asch, Rebecca G. Interannual-to-Decadal Changes in Phytoplankton Phenology, Fish Spawning Habitat, and Larval Fish Phenology. PhD Dissertation, SIO, UCSD. 234pages. (2013)
Bain, R. Monte Carlo Likelihood Estimation For Conditional Autoregressive Models With Application To Sparse Spatiotemporal Data. Florida State University, Tallahassee, FL. (2013)
Powell, Jesse. Ocean fronts in the Southern California Current System and their role in structuring zooplankton distributions, diel vertical migration, and size composition. PhD Dissertation. SIO, UCSD. (2013)
Taylor, A. G. Biomass structure and environmental relationships for phytoplankton communities in the southern California Current and adjacent ocean ecosystems UCSD, Scripps Institution of Oceanography, La Jolla, CA. (2014)
Submitted and In Press:
Barron, J. A., D. Bukry, and I. L. Hendy. High-resolution paleoclimatology of the Santa Barbara Basin during the Medieval Climate Anomaly and early Little Ice Age based on diatom and silicoflagellate assemblages in Kasten core SPR0901-02KC. Quaternary International. (2014)
Bograd, S. J., A. W. Leising, and E. L. Hazen. Oceanographic Drivers. Ecosystems of California – A Source Book, H. Mooney, and E. Zavaleta, Eds., University of California Press. (2014)
Bograd, S. J., E. L. Hazen, A. W. Maxwell, A. W. Leising, H. Bailey, and R. D. Brodeur. Offshore Ecosystems. Ecosystems of California – A Source Book, University of California Press. (2014)
Bograd, S. J., M. P. Buil, E. D. Lorenzo, C. G. Castro, I. D. Schroeder, R. Goericke, C. R. Anderson, C. Benitez-Nelson, and F. A. Whitney. Changes in source Waters to the southern California bight. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Campbell, G. S., K. Whitaker, L. Thomas, A. Douglas, J. Calambokidis and J. A. Hildebrand. Inter-annual and seasonal trends in cetacean distribution, density and abundance in waters off southern California. Deep Sea Research Part II: Topical Studies in Oceanography. (In Press)
Davis, A., and E. Di Lorenzo. Interannual forcing mechanisms of California Current transports I: Meridional Currents. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Douglas, A., J. Calambokidis, L. Munger, M. Soldevilla, M. Ferguson, A. Havron, D. Camacho, G. S. Campbell, and J. A. Hildebrand. Seasonal distribution and abundance of cetaceans off Southern California: results from CalCOFI cruises from 2004-2008. Fishery Bulletin. (In Press)
Glaser, S. M., M. J. Fogarty, H. Liu, I. Altman, C.-H. Hsieh, L. Kaufman, A. D. MacCall, A. A. Rosenberg, H. Ye, and G. Sugihara. Complex dynamics may limit prediction in marine fisheries. Fish and Fisheries. (2013)
Jacox, M. G., C. A. Edwards, M. Kahru, D. L. Rudnick, and R. M. Kudela. The potential for improving remote primary productivity estimates through subsurface chlorophyll and irradiance measurement. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Kahru, M., Z. Lee, R. M. Kudela, M. Manzano-Sarabia, and B. Greg Mitchell. Multi-satellite time series of inherent optical properties in the California Current. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Koslow, J. A., P. Davison, A. Lara-Lopez, and M. D. Ohman. Epipelagic and mesopelagic fishes in the southern California Current System: Ecological interactions and oceanographic influences on their abundance. Journal of Marine Systems. (2014)
Kuhn, C. E., and D. P. Costa. Interannual variation in the at-sea behavior of California sea lions (Zalophus californianus). Marine Mammal Science. (2014)
Larsson, J., N. Celepli, K. Ininbergs, C. L. Dupont, S. Yooseph, B. Bergman, and M. Ekman. Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea. International Society for Microbial Ecology. (2014)
Mengerink, K. J., C. L. Van Dover, J. Ardron, M. Baker, E. Escobar-Briones, K. Gjerde, A. J. Koslow, E. Ramirez-Llodra, A. Lara-Lopez, D. Squires, T. Sutton, A. K. Sweetman and L. Levin. A call for deep ocean stewardship. Science. (2014)
Miller, A. J., H. Song, and A. C. Subramanian. The physical oceanographic environment during the CCE-LTER Years: Changes in climate and concepts. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Nieto, K. M., S. McClatchie, E. D. Weber and C. Lennert-Cody. Effect of mesoscale eddies and streamers on sardine spawning habitat and recruitment success off southern and central California. Journal of Geophysical Research. (In Press)
Powell, J. R., and M. D. Ohman. Co-variability of zooplankton gradients with glider-detected density fronts in the Southern California Current System. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Sydeman, W. J., S. A. Thompson, J. A. Santora, A. J. Koslow, R. Goericke, and M. D. Ohman. Climate–ecosystem change off southern California: Time-dependent seabird predator–prey numerical responses. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Taylor, A. G., M. R. Landry, K. E. Selph, and J. J. Wokuluk. Temporal and spatial patterns of microbial community biomass and composition in the Southern California Current Ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography. (2014)
Thompson, A. R., T. D. Auth, R. D. Brodeur, N. M. Bowlin and W. Watson. Dynamics of larval fish assemblages in the California Current System: A comparative study between Oregon and southern California. Marine Ecology Progress Series. (In Press)
Journal Articles:
Alin, S. R., R. A. Feely, A. G. Dickson, J. M. Hernández-Ayón, L. W. Juranek, M. D. Ohman and R. Goericke. 2012. Robust empirical relationships for estimating the carbonate system in the southern California Current System and application to CalCOFI hydrographic cruise data (2005–2011). Journal of Geophysical Research 117(C5):C05033.
Asch, R. G. and D. M. Checkley Jr. 2013. Dynamic height: A key variable for identifying the spawning habitat of small pelagic fishes. Deep Sea Research Part I: Oceanographic Research Papers 71(0):79-91.
Bjorkstedt, E. P., R. Goericke, S. McClatchie, E. D. Weber, W. Watson, N. Lo, W. Peterson, R. Brodeur, S. Bograd, T. Auth, J. Fisher, C. Morgan, J. Peterson, R. Durazo, G. Gaxiola-Castro, B. Lavaniegos, F. Chavez, C. A. Collins, J. Field, K. Sakuma, W. Satterthwaithe, M. O’Farrell, W. J. Sydeman, S. A. Thompson, P. Warzybok, R. Bradley, J. Jahncke, R. Golightly, S. Schneider, J. L. Largier, S. Y. Kim, S. Melin, R. DeLong and J. Abell. 2012. State of the California Current 2011-2012: Ecosystems respond to local forcing as La Nina wavers and wanes. CalCOFI Reports 53:41-76.
Brinton, E., A. W. Townsend, M. D. Knight and M. D. Ohman. 2013. Development of Thysanopoda egregia (Euphausiacea) furciliae and early juvenile. Journal of Crustacian Biology 33(2):244-252.
Chenillat, F., P. Rivière, X. Capet, E. Di Lorenzo and B. Blanke. 2012. North Pacific Gyre Oscillation modulates seasonal timing and ecosystem functioning in the California Current upwelling system. Geophysical Research Letters 39(1):L01606.
Décima, M., M. R. Landry and B. N. Popp. 2013. Environmental perturbation effects on baseline d15N values and zooplankton trophic flexibility in the southern California Current Ecosystem. Limnol. Oceanogr 58(2):624-634.
Di Lorenzo, E. and M. D. Ohman. 2013. A double-integration hypothesis to explain ocean ecosystem response to climate forcing. Proceedings of the National Academy of Sciences 110(7):2496-2499.
Doney, S. C. and S. F. Sailley. 2013. When an ecological regime shift is really just stochastic noise. Proceedings of the National Academy of Sciences 110(7):2438-2439.
Goericke, R. and J. A. Koslow. 2012. CalCOFI – A 63-Year-Old Ocean Observing System. Ocean Carbon and Biogeochemistry 5(2):1-4.
Hannesson, R. 2013. Strictly for the birds?: On ecosystem services of forage fish. Marine Policy 38(0):109-115.
Hitchman, S. M., N. B. Reyns and A. R. Thompson. 2012. Larvae define spawning habitat of bocaccio rockfish Sebastes paucispinis within and around a large southern California marine reserve. Marine Ecology Progress Series 465:227-242.
Jacobson, Larry and McClatchie, S. Comment on temperature-dependent stock–recruit modeling for Pacific sardine (Sardinops sagax) in Jacobson and MacCall (1995), McClatchie et al. (2010), and Lindegren and Checkley (2013). Canadian Journal of Fisheries and Aquatic Sciences 70: 1566-1569. dx.doi.org/10.1139/cjfas-2013-0128. (2013)
Kahru, M., E. Di Lorenzo, M. Manzano-Sarabia and B. G. Mitchell. 2012. Spatial and temporal statistics of sea surface temperature and chlorophyll fronts in the California Current. J. of Plankton Research 34(9):749-760.
Kahru, M., R. M. Kudela, M. Manzano-Sarabia and B. G. Mitchell. 2012. Trends in the surface chlorophyll of the California Current: Merging data from multiple ocean color satellites. Deep-Sea Research II 77-80:89-98.
Koslow, J. A., R. Goericke and W. Watson. 2013. Fish assemblages in the Southern California Current: relationships with climate, 1951–2008. Fisheries Oceanography. doi: 10.1111/fog.12018
Koslow, J. A., L. Rogers-Bennett and D. Neilson. 2012. A Time Series Of California Spiny Lobster (Panulirus Interruptus) Phyllosoma From 1951 To 2008 Links Abundance To Warm Oceanographic Conditions In Southern California. CalCOFI Reports 53:132-139.
Landry, M. R., M. D. Ohman, R. Goericke, M. R. Stukel, K. Barbeau, R. Dundy and M. Kahru. 2012. Pelagic community responses to a deep-water front in the California Current Ecosystem: Overview of the A-Front Study. J. of Plankton Research 34(9):739-748.
Lewison, R., D. Oro, B. Godley, L. Underhill, B. R.P., D. Wilson, D. Ainley, J. M. Arcos, P. D. Boersma, T. Borborodlu, T. Boulinier, M. Frederiksen, M. Genovart, J. A. Gonzalez-Solis, D. Green, D. Gremillet, K. C. Hamer, G. M. Hilton, A. Martinez-Abrain, W. A. Montevecchi, R. A. Phillips, P. G. Ryan, P. Sagar, W. J. Sydeman, P. Yorio, S. Wanless, Y. Watanuki and H. Weimerskirch. 2012. Research priorities for seabirds: improving conservation and management in the 21st century. Endangered Species Research 17:93-121.
Lindegren, M. and D. M. Checkley. 2013. Temperature dependence of Pacific sardine (Sardinops sagax) recruitment in the California Current Ecosystem revisited and revised. Canadian Journal of Fisheries and Aquatic Sciences 70(2): 245-252.
Macías, D., P. J. S. Franks, M. D. Ohman and M. R. Landry. 2012. Modeling the effects of coastal wind-and wind-stress curl-driven upwellings on plankton dynamics in the Southern California current system. Journal of Marine Systems 94:107-119.
Miller, EF, McGowan JA. 2013. Faunal shift in southern California’s coastal fishes: A new assemblage and trophic structure takes hold. Estuarine Coastal and Shelf Science. 127:29-36.
Send, U. and S. Nam. 2012. Relaxation from upwelling: The effect on dissolved oxygen on the continental shelf. Journal of Geophysical Research: Oceans 117(C4):C04024.
Song, H., A. J. Miller, S. McClatchie, E. D. Weber, K. M. Nieto and D. M. Checkley. 2012. Application of a data-assimilation model to variability of Pacific sardine spawning and survivor habitats with ENSO in the California Current System. Journal of Geophysical Research: Oceans 117(C3):C03009.
Stukel, M. R., M. R. Landry, M. D. Ohman, R. Goericke, T. Samo and C. R. Benitez-Nelson. 2012. Do inverse ecosystem models accurately reconstruct plankton trophic flows? Comparing two solution methods using field data from the California Current. Journal of Marine Systems 91:20-33.
Sugihara, G., J. Beddington, C. Hsieh, E. Deyle, M. Fogarty, S. M. Glaser, R. Hewitt, A. Hollowed, R. M. May, S. B. Munch, C. Perretti, A. Rosenbeg, S. Sandin and H. Ye. 2012. Are exploited fish populations stable. Proc. Natl. Acad. Sci. 108(48):1224-1225.
Sugihara, G., R. M. May, H. Ye, C. H. Hsieh, M. Deyle, M. Fogarty and S. B. Munch. 2012. Detecting causation in complex ecosystems. Science 338:496-500.
Suntsov, A., J. A. Koslow and W. Watson. 2012. The Spatial Structure Of Coastal Ichthyoplankton Assemblages Off Central And Southern California. CalCOFI Reports 53:153-170.
Suryan, R. M., J. A. Santora and W. J. Sydeman. 2012. New approach for using remotely-sensed chlorophyll a to identify seabird hotspots. Marine Ecology Progress Series 451:213-225.
Sydeman, W. J., S. A. Thompson and A. Kitaysky. 2012. Seabirds and climate change: roadmap for the future. Marine Ecology Progress Series 454:107-117.
Thompson, A. R., W. Watson, S. McClatchie and E. D. Weber. 2012. Multi-Scale Sampling to Evaluate Assemblage Dynamics in an Oceanic Marine Reserve. PloS one 7(3).
Venrick, E. L. Phytoplankton in the California Current System off Southern California: Changes in a Changing Environment. Progress in Oceanography 104:46-58.
Xiu, P. and F. Chai. 2012. Spatial and temporal variability in phytoplankton carbon, chlorophyll, and nitrogen in the North Pacific. Journal of Geophysical Research: Oceans 117(C11):C11023.
Books/Articles-in-Books:
Sam McClatchie, Regional Fisheries Oceanography of the California Current System and the Calcofi Program. Springer (2013).
Mark D Ohman, and T.K. Kratz, ‘Cross-Site Comparisons of Ecological Responses to Climate and Climate-Related Drivers’, in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, ed. by D.P.C. Peters, C.M. Laney, A.E. Lugo, et al. Washington, D.C.: U.S. Deptartment of Agriculture, (2012). Ch. 21.
D.P.C. Peters, W.R. Fraser, T.K. Kratz, Mark D Ohman, A. Rassweiler, S.J. Holbrook, and R.J. Schmitt, ‘Cross-Site Comparisons of State Change Dynamics’, in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, ed. by D.P.C. Peters, C.M. Laney, A.E. Lugo, et al. Washington, D.C.: U.S. Department of Agriculture, (2012). Ch. 16.
D.P.C. Peters, C.M. Laney, A.E. Lugo, S.L. Collins, C.T. Driscoll, P.M. Groffman, J.M. Grove, A.K. Knapp, T.K. Kratz, Mark D Ohman, R.B. Waide, and J. Yao, ‘Long-Term Trends in Climate and Climate-Related Drivers’, in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, ed. by D.P.C. Peters, C.M. Laney, A.E. Lugo and et al. Washington, D.C.: U.S. Department of Agriculture, (2012). Ch. 43.
D.P.C. Peters, C.M. Laney, A.E. Lugo, S.L. Collins, C.T. Driscoll, P.M. Groffman, J.M. Grove, A.K. Knapp, T.K. Kratz, Mark D Ohman, R.B. Waide, and J. Yao, ‘Long-Term Trends in Precipitation and Surface Water Chemistry’, in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, ed. by D.P.C. Peters, C.M. Laney, A.E. Lugo, et al. Washington, D.C.: U.S. Department of Agriculture, (2012). Ch. 59.
D.P.C. Peters, C.M. Laney, A.E. Lugo, S.L. Collins, C.T. Driscoll, P.M. Groffman, J.M. Grove, A.K. Knapp, T.K. Kratz, Mark D Ohman, R.B. Waide, and J. Yao, ‘Long-Term Trends in Production, Abundance, and Richness of Plants and Animals’, in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, ed. by D.P.C. Peters, C.M. Laney, A.E. Lugo, et al. Washington, D.C.: U.S. Department of Agriculture, (2012). Ch. 20.
Journal Articles:
Allen, L. Z., E. E. Allen, J. H. Badger, J. P. McCrow, I. T. Paulsen, L. D. H. Elbourne, M. Thiagarajan, D. B. Rusch, K. H. Nealson and S. J. Williamson. Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. The ISME Journal. (2012)
Bargu, S., M.W. Silver, M.D. Ohman, C.R. Benitez-Nelson, and D.L. Garrison. “Mystery Behind Hitchcock’s Birds.” Nature Geosciences 5, no. 1: 2-3. (2012)
Bjorkstedt. E., R. Goericke, S. McClatchie and 28 other authors. State of the California Current 2010-2011. Regionally variable responses to a strong (but fleeting?) La Niña. CalCOFI Reports 52: 36-68. (2011)
Broquet, G., A. M. Moore, H. G. Arango and C. A. Edwards. Corrections to ocean surface forcing in the California Current System using 4D variational data assimilation. Ocean Modelling 36(1–2):116-132. (2011)
Deutsch, C., H. Brix, T. Ito, H. Frenzel and L. A. Thompson. Climate-forced variability of ocean hypoxia. Science 333(6040):336. (2011)
Deutsch, C. and T. Weber. Nutrient ratios as a tracer and driver of ocean biogeochemistry. Annual Review of Marine Science 4(1):113-141. (2012)
Doron, M., M. Babin, O. Hembise, A. Mangin and P. Garnesson. Ocean transparency from space: Validation of algorithms estimating Secchi depth using MERIS, MODIS and SeaWiFS data. Remote Sensing of Environment 115(12):2986-3001. (2011)
Dorval, E., K. Piner, L. Robertson, C. S. Reiss, B. Javor and R. Vetter. Temperature record in the oxygen stable isotopes of Pacific sardine otoliths: Experimental vs. wild stocks from the Southern California Bight. Journal of Experimental Marine Biology and Ecology 397(2):136-143. (2011)
Doyle, M. J., W. Watson, N. M. Bowlin and S. B. Sheavly. Plastic particles in coastal pelagic ecosystems of the Northeast Pacific ocean. Marine Environmental Research 71(1):41-52. (2011).
Gleason, L. U. and R. S. Burton. High-throughput molecular identification of fish eggs using multiplex suspension bead arrays. Molecular Ecology Resources 12(1):57-66. (2012)
King, J. R., V. N. Agostini, C. J. Harvey, G. A. McFarlane, M. G. G. Foreman, J. E. Overland, E. Di Lorenzo, N. A. Bond and K. Y. Aydin. Climate forcing and the California Current ecosystem. ICES Journal of Marine Science: Journal du Conseil 68(6):1199-1216. (2011)
Koslow, J. A., R. Goericke, A. Lara-Lopez and W. Watson. Impact of declining intermediate-water oxygen on deepwater fishes in the California Current. Marine Ecology Progress Series 436:207-218. (2011)
LaVigne, M., T. M. Hill, H. J. Spero and T. P. Guilderson. Bamboo coral Ba/Ca: Calibration of a new deep ocean refractory nutrient proxy. Earth and Planetary Science Letters 312(3–4):506-515. (2011)
Lopez, A. L., P. Davison and J. A. Koslow. Introduction of multi-frequency acoustics and mid-water trawl sampling to the CALCOFI program. The Journal of the Acoustical Society of America 129:2692. (2011)
Lucas, A. J., P. J. S. Franks and C. L. Dupont. Horizontal internal-tide fluxes support elevated phytoplankton productivity over the inner continental shelf. Limnology & Oceanography: Fluids & Environments 1:56-74. (2011)
Macías, D., P. Franks, M. Ohman and M. Landry. Modeling the effects of coastal wind-and wind-stress curl-driven upwellings on plankton dynamics in the Southern California current system. Journal of Marine Systems. (2011)
Macias, D., M. R. Landry, A. Gershunov, A. J. Miller and P. S. Franks. Climatic Control of Upwelling Variability along the Western North-American Coast. PLoS ONE 7(1):e30436. (2012)
McClatchie, S. Sardine biomass is poorly correlated with the Pacific Decadal Oscillation off California. Geophysical Research Letters 39, L13703, doi:10.1029/2012GL052140. (2012)
McClatchie, S, Cowen, R.K., Nieto, K.M., Greer, A., Luo, J.Y., Guigand, C., Demer, D.A., Griffith, D.A., Rudnick, D.L. Resolution of fine biological structure including small narcomedusae across a front in the Southern California Bight. Journal of Geophysical Research 117, C04020, doi:10.1029/2011JC007565. (2012)
McQuatters-Gollop, A., P. C. Reid, M. Edwards, P. H. Burkill, C. Castellani, S. Batten, W. Gieskes, D. Beare, R. R. Bidigare, E. Head, R. Johnson, M. Kahru, J. A. Koslow and A. Pena. Is there a decline in marine phytoplankton? Nature 472(7342):E6-E7. (2011)
Mortyn, P. G., J. C. Herguera and M. A. Martínez-Botí. Instrumental validation of Globigerinoides ruber Mg/Ca as a proxy for NE Pacific summer SST. Geophysical Research Letters 38(16):L16601. (2011)
Nam, S., H. J. Kim and U. Send. Amplification of hypoxic and acidic events by La Niña conditions on the continental shelf off California. Geophysical Research Letters 38(22):L22602. (2011)
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